Dataset: Basal gene expression data of 21 cell lines (18 cancer and 3 non-tumorigenic)
We profiled basal gene expressed levels of 21 cell lines (18 cancer and 3 non-tumorigenic) using Affymetrix HG-U133_plus2 GeneChip...
We profiled basal gene expressed levels of 21 cell lines (18 cancer and 3 non-tumorigenic) using Affymetrix HG-U133_plus2 GeneChip microarrays. Goal of the experiment was to benchmark a number of algorithms for biomarker detection all of which utilize gene expression data. Cell lines were cultivated in appropriate media according to supplier recommendations. Goal was to acquire a basal gene expression profile of 21 common cell lines.
- Species:
- human
- Samples:
- 63
- Source:
- E-GEOD-41445
- Updated:
- Dec.12, 2014
- Registered:
- Sep.19, 2014
Factors:
(via ArrayExpress)
| Sample | ORGAN | CELL LINE | METASTASIS | DISEASE | NUMBER | GROWTH | SITE | MORPHOLOGY | SEX |
|---|---|---|---|---|---|---|---|---|---|
| GSM1017454 | kidney | 786-O | no | Renal Cell Adenocarcinoma | CRL-1932 | yes | n/a | epithelial | male |
| GSM1017454 | kidney | 786-O | no | Renal Cell Adenocarcinoma | CRL-1932 | yes | n/a | epithelial | male |
| GSM1017454 | kidney | 786-O | no | Renal Cell Adenocarcinoma | CRL-1932 | yes | n/a | epithelial | male |
| GSM1017457 | lung | A549 | no | non-small cell carcinoma | CCL-185 | yes | n/a | epithelial | male |
| GSM1017457 | lung | A549 | no | non-small cell carcinoma | CCL-185 | yes | n/a | epithelial | male |
| GSM1017457 | lung | A549 | no | non-small cell carcinoma | CCL-185 | yes | n/a | epithelial | male |
| GSM1017460 | colon | Caco-2 | no | colorectal adenocarcinoma | HTB-37 | not tested | n/a | epithelial | male |
| GSM1017460 | colon | Caco-2 | no | colorectal adenocarcinoma | HTB-37 | not tested | n/a | epithelial | male |
| GSM1017460 | colon | Caco-2 | no | colorectal adenocarcinoma | HTB-37 | not tested | n/a | epithelial | male |
| GSM1017463 | prostate | DU 145 | yes | moderately differentiated adenocarcinoma | HTB-81 | yes | brain | epithelial | male |
| GSM1017463 | prostate | DU 145 | yes | moderately differentiated adenocarcinoma | HTB-81 | yes | brain | epithelial | male |
| GSM1017463 | prostate | DU 145 | yes | moderately differentiated adenocarcinoma | HTB-81 | yes | brain | epithelial | male |
| GSM1017466 | Skin | HaCaT | no | non-tumorigenic; spontaneously immortilized keratinocytes | n/a (PMID: 2450098) | yes | n/a | epithelial | female |
| GSM1017466 | Skin | HaCaT | no | non-tumorigenic; spontaneously immortilized keratinocytes | n/a (PMID: 2450098) | yes | n/a | epithelial | female |
| GSM1017466 | Skin | HaCaT | no | non-tumorigenic; spontaneously immortilized keratinocytes | n/a (PMID: 2450098) | yes | n/a | epithelial | female |
| GSM1017469 | colon | HCT 116 | no | Colorectal Carcinoma | CCL-247 | yes | n/a | epithelial | male |
| GSM1017469 | colon | HCT 116 | no | Colorectal Carcinoma | CCL-247 | yes | n/a | epithelial | male |
| GSM1017469 | colon | HCT 116 | no | Colorectal Carcinoma | CCL-247 | yes | n/a | epithelial | male |
| GSM1017472 | cervix | HeLa | no | adenocarcinoma | CCL-2 | not tested | n/a | epithelial | female |
| GSM1017472 | cervix | HeLa | no | adenocarcinoma | CCL-2 | not tested | n/a | epithelial | female |
| GSM1017472 | cervix | HeLa | no | adenocarcinoma | CCL-2 | not tested | n/a | epithelial | female |
| GSM1017475 | Skin | Hs68 | no | non-tumorigenic; aspartoacylase deficiency; possible Canavan disease | CRL-1635 | not tested | n/a | fibroblast | male |
| GSM1017475 | Skin | Hs68 | no | non-tumorigenic; aspartoacylase deficiency; possible Canavan disease | CRL-1635 | not tested | n/a | fibroblast | male |
| GSM1017475 | Skin | Hs68 | no | non-tumorigenic; aspartoacylase deficiency; possible Canavan disease | CRL-1635 | not tested | n/a | fibroblast | male |
| GSM1017478 | colon | HT-29 | no | colorectal adenocarcinoma | HTB-38 | yes | n/a | epithelial | female |
| GSM1017478 | colon | HT-29 | no | colorectal adenocarcinoma | HTB-38 | yes | n/a | epithelial | female |
| GSM1017478 | colon | HT-29 | no | colorectal adenocarcinoma | HTB-38 | yes | n/a | epithelial | female |
| GSM101748 | Breast | KPL-4 | yes | invasive ductal carcinoma; inflammatory skin metastasis | n/a (PMID: 10070858) | yes | pleural fluid | epithelial | female |
| GSM101748 | Breast | KPL-4 | yes | invasive ductal carcinoma; inflammatory skin metastasis | n/a (PMID: 10070858) | yes | pleural fluid | epithelial | female |
| GSM101748 | Breast | KPL-4 | yes | invasive ductal carcinoma; inflammatory skin metastasis | n/a (PMID: 10070858) | yes | pleural fluid | epithelial | female |
| GSM1017484 | Breast | MCF 10A | no | non-tumorigenic; Fibrocystic Breast disease | CRL-10317 | not tested | n/a | epithelial | female |
| GSM1017484 | Breast | MCF 10A | no | non-tumorigenic; Fibrocystic Breast disease | CRL-10317 | not tested | n/a | epithelial | female |
| GSM1017484 | Breast | MCF 10A | no | non-tumorigenic; Fibrocystic Breast disease | CRL-10317 | not tested | n/a | epithelial | female |
| GSM1017487 | Breast | MCF7 | yes | intraductal adenocarcinoma | HTB-22 | not tested | pleural fluid | epithelial | female |
| GSM1017487 | Breast | MCF7 | yes | intraductal adenocarcinoma | HTB-22 | not tested | pleural fluid | epithelial | female |
| GSM1017487 | Breast | MCF7 | yes | intraductal adenocarcinoma | HTB-22 | not tested | pleural fluid | epithelial | female |
| GSM1017490 | Breast | MDA-MB-231 | yes | adenocarcinoma | HTB-26 | not tested | pleural fluid | epithelial | female |
| GSM1017490 | Breast | MDA-MB-231 | yes | adenocarcinoma | HTB-26 | not tested | pleural fluid | epithelial | female |
| GSM1017490 | Breast | MDA-MB-231 | yes | adenocarcinoma | HTB-26 | not tested | pleural fluid | epithelial | female |
| GSM1017493 | pancreas | MIA Paca-2 | no | carcinoma | CRL-1420 | yes | n/a | attached epithelial with floating rounded cells | female |
| GSM1017493 | pancreas | MIA Paca-2 | no | carcinoma | CRL-1420 | yes | n/a | attached epithelial with floating rounded cells | female |
| GSM1017493 | pancreas | MIA Paca-2 | no | carcinoma | CRL-1420 | yes | n/a | attached epithelial with floating rounded cells | female |
| GSM1017496 | lung | NCI-H460 | yes | Large Cell Carcinoma | HTB-177 | yes | pleural fluid | epithelial | male |
| GSM1017496 | lung | NCI-H460 | yes | Large Cell Carcinoma | HTB-177 | yes | pleural fluid | epithelial | male |
| GSM1017496 | lung | NCI-H460 | yes | Large Cell Carcinoma | HTB-177 | yes | pleural fluid | epithelial | male |
| GSM1017499 | prostate | PC-3 | yes | Gleason Grade 4; adenocarcinoma | CRL-1435 | yes | bone | epithelial | male |
| GSM1017499 | prostate | PC-3 | yes | Gleason Grade 4; adenocarcinoma | CRL-1435 | yes | bone | epithelial | male |
| GSM1017499 | prostate | PC-3 | yes | Gleason Grade 4; adenocarcinoma | CRL-1435 | yes | bone | epithelial | male |
| GSM1017502 | Skin | SK-MEL-28 | no | Malignant Melanoma | HTB-72 | yes | n/a | polygonal | male |
| GSM1017502 | Skin | SK-MEL-28 | no | Malignant Melanoma | HTB-72 | yes | n/a | polygonal | male |
| GSM1017502 | Skin | SK-MEL-28 | no | Malignant Melanoma | HTB-72 | yes | n/a | polygonal | male |
| GSM1017505 | ovary | SK-OV-3 | yes | adenocarcinoma | HTB-77 | yes | ascites | epithelial | female |
| GSM1017505 | ovary | SK-OV-3 | yes | adenocarcinoma | HTB-77 | yes | ascites | epithelial | female |
| GSM1017505 | ovary | SK-OV-3 | yes | adenocarcinoma | HTB-77 | yes | ascites | epithelial | female |
| GSM1017508 | colon | SW480 | no | Dukes' type B; colorectal adenocarcinoma | CCL-228 | yes | n/a | epithelial | female |
| GSM1017508 | colon | SW480 | no | Dukes' type B; colorectal adenocarcinoma | CCL-228 | yes | n/a | epithelial | female |
| GSM1017508 | colon | SW480 | no | Dukes' type B; colorectal adenocarcinoma | CCL-228 | yes | n/a | epithelial | female |
| GSM10175 | Breast | T47D | yes | Ductal Carcinoma | HTB-133 | yes | pleural fluid | epithelial | female |
| GSM10175 | Breast | T47D | yes | Ductal Carcinoma | HTB-133 | yes | pleural fluid | epithelial | female |
| GSM10175 | Breast | T47D | yes | Ductal Carcinoma | HTB-133 | yes | pleural fluid | epithelial | female |
| GSM1017514 | bone | U-2 OS | no | osteosarcoma | HTB-96 | not tested | n/a | epithelial | female |
| GSM1017514 | bone | U-2 OS | no | osteosarcoma | HTB-96 | not tested | n/a | epithelial | female |
| GSM1017514 | bone | U-2 OS | no | osteosarcoma | HTB-96 | not tested | n/a | epithelial | female |