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<biogps><data><item key="owner">ArrayExpress Uploader</item><item key="ownerprofile_id">arrayexpress_sid</item><item key="species">human</item><item key="factors"><item><item key="GSM995513 1"/></item><item><item key="GSM995512 1"/></item><item><item key="GSM995511 1"/></item><item><item key="GSM995510 1"/></item><item><item key="GSM995509 1"/></item><item><item key="GSM995508 1"/></item><item><item key="GSM995507 1"/></item><item><item key="GSM995506 1"/></item><item><item key="GSM995505 1"/></item></item><item key="id">2303</item><item key="pop_total">0</item><item key="platform">4</item><item key="summary_wrapped">K-RAS activating mutations occur frequently in non-small cell lung cancer (NSCLC), leading to aberrant activation of Ras-MAPK signaling...</item><item key="geo_gse_id">E-GEOD-40517</item><item key="owner_profile">/profile/8773/arrayexpressuploader</item><item key="factor_count">0</item><item key="sample_count">9</item><item key="tags"><item>cancer</item><item>cell</item><item>genome</item><item>lung</item><item>lung cancer</item><item>nsclc</item></item><item key="lastmodified">Dec.12, 2014</item><item key="is_default">False</item><item key="geo_id_plat">E-GEOD-40517_A-AFFY-44</item><item key="slug">selective-requirement-for-mediator-med23-in-ras-ac</item><item key="geo_gds_id"/><item key="name">Selective Requirement for Mediator MED23 in Ras-active Lung Cancer</item><item key="created">Jul.12, 2014</item><item key="summary">K-RAS activating mutations occur frequently in non-small cell lung cancer (NSCLC), leading to aberrant activation of Ras-MAPK signaling pathway that contributes to the malignant phenotype. However, the development of Ras-targeted therapeutics remains challenging. Here, we show that MED23, a component of the multisubunit Mediator complex that is known to integrate signaling and gene activities, is selectively important for Ras-active lung cancer. By screening a large panel of human lung cancer cell lines with or without a Ras mutation, we found that Med23 RNAi specifically inhibits the proliferation and tumorigenicity of lung cancer cells with hyperactive Ras activity. Med23-deficiency in fibroblasts selectively inhibited the oncogenic transformation induced by Ras but not by c-Myc. Transcription factor ELK1, which is phosphorylated by MAPK for relaying the Ras signaling to MED23, was also required for the Ras-driven oncogenesis. Transcriptiome analysis revealed that MED23 and ELK1 co-regulate a common set of target genes enriched in regulating cell cycle and proliferation to support the Ras-dependency. Furthermore, correlated with the strength of Ras signaling as indicated by the ELK1 phosphorylation level, MED23 was up-regulated by Ras-transformation, and was found to be overexpressed in both Ras-mutated lung cancer cell lines and primary tumor samples. Remarkably, lower Med23 expression predicts better survival in Ras-active lung cancer patients and xenograft mice. Collectively, our findings demonstrate a critical role for MED23 in enabling the &#8220;Ras-addiction&#8221; of lung carcinogenesis, thus providing a vulnerable target for the treatment of Ras-active lung cancer. To gain a genome-wide understanding of how MED23 and ELK1 control gene expression in Ras-active lung cancer cells, we performed gene profiling experiments to analyze the transcriptomes from control, si-Med23, or si-Elk1 A549 cells. The si-Ctrl, si-Med23 and si-Elk1 A549 cells were cultured in the normal condition. Then the cells were harvested for RNA extraction and hybridization on Affymetrix microarrays. The analysis contain 9 samples. si-Ctrl cells have three replicates (si-Ctrl#1, si-Ctrl#2 and si-Ctrl#3), and the si-Med23 or si-Elk1 group contains three different cell lines that harbor three different RNAi oligos against Med23 or Elk1 (si-Med23A, B, C and si-Elk1A, B, C).</item><item key="source">http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40517</item><item key="sample_source">http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-40517/samples/</item></data></biogps>
