Dataset: Microarray analysis of genes activated by mouse CAR and human CAR in vivo.
This dataset is a four-ligand x three-genotype Affymetrix microarray analysis of the regulation of liver genes in the mouse by the...
This dataset is a four-ligand x three-genotype Affymetrix microarray analysis of the regulation of liver genes in the mouse by the constitutive androstane receptor (CAR). 24 female mice of mixed background (C57BL/6x129Sv) were divided into three groups: wild-type (contains only mouse CAR; mCAR), CAR.KO = knockout mice (mice ablated for mCAR gene; mCAR -/-), and CAR.AH= contains human CAR transgene under the control of the mouse albumin promoter in the mCAR -/- background. Each of the three groups underwent four different treatment regimens: CO = corn oil vehicle control, PB = phenobarbitol (100 mg/kg/day), an anti-convulsant agent which can translocate both mCAR and hCAR into the nucleus to turn on target gene expression, TC = TCPOBOP, a potent non-metabolized ligand of mCAR (3 mg/kg), CITCO = a hCAR specific ligand (30 mg/kg/day). Two mice were used per treatment group and each mouse RNA was used for one chip.
- Species:
- mouse
- Samples:
- 24
- Source:
- E-GEOD-40120
- Updated:
- Dec.12, 2014
- Registered:
- Nov.23, 2014
Sample | LIGAND | GENOTYPE |
---|---|---|
GSM985983 | phenobarbitol | wild-type |
GSM985983 | phenobarbitol | wild-type |
GSM985985 | phenobarbitol | mCAR knockout |
GSM985985 | phenobarbitol | mCAR knockout |
GSM985987 | phenobarbitol | hCAR transgenic in mCAR knockout background |
GSM985987 | phenobarbitol | hCAR transgenic in mCAR knockout background |
GSM985989 | CITCO; 6-(4-chlorophenyl)imidazo[2-1-b][1,3]thiazole-5-carbaldehyde O-(3,4-dichlorobenzyl)oxime | wild-type |
GSM985989 | CITCO; 6-(4-chlorophenyl)imidazo[2-1-b][1,3]thiazole-5-carbaldehyde O-(3,4-dichlorobenzyl)oxime | wild-type |
GSM98599 | CITCO; 6-(4-chlorophenyl)imidazo[2-1-b][1,3]thiazole-5-carbaldehyde O-(3,4-dichlorobenzyl)oxime | mCAR knockout |
GSM98599 | CITCO; 6-(4-chlorophenyl)imidazo[2-1-b][1,3]thiazole-5-carbaldehyde O-(3,4-dichlorobenzyl)oxime | mCAR knockout |
GSM985993 | CITCO; 6-(4-chlorophenyl)imidazo[2-1-b][1,3]thiazole-5-carbaldehyde O-(3,4-dichlorobenzyl)oxime | hCAR transgenic in mCAR knockout background |
GSM985993 | CITCO; 6-(4-chlorophenyl)imidazo[2-1-b][1,3]thiazole-5-carbaldehyde O-(3,4-dichlorobenzyl)oxime | hCAR transgenic in mCAR knockout background |
GSM985995 | corn oil | wild-type |
GSM985995 | corn oil | wild-type |
GSM985997 | corn oil | mCAR knockout |
GSM985997 | corn oil | mCAR knockout |
GSM985999 | corn oil | hCAR transgenic in mCAR knockout background |
GSM985999 | corn oil | hCAR transgenic in mCAR knockout background |
GSM98600 | TCPOBOP; 1,4-bis[2-(3, 5-dichloropyridyloxy)]benzene | wild-type |
GSM98600 | TCPOBOP; 1,4-bis[2-(3, 5-dichloropyridyloxy)]benzene | wild-type |
GSM986003 | TCPOBOP; 1,4-bis[2-(3, 5-dichloropyridyloxy)]benzene | mCAR knockout |
GSM986003 | TCPOBOP; 1,4-bis[2-(3, 5-dichloropyridyloxy)]benzene | mCAR knockout |
GSM986005 | TCPOBOP; 1,4-bis[2-(3, 5-dichloropyridyloxy)]benzene | hCAR transgenic in mCAR knockout background |
GSM986005 | TCPOBOP; 1,4-bis[2-(3, 5-dichloropyridyloxy)]benzene | hCAR transgenic in mCAR knockout background |