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<biogps><data><item key="owner">ArrayExpress Uploader</item><item key="pop_total">0</item><item key="id">2518</item><item key="factors"><item><item key="GSM947242"><item key="GROUP">A</item><item key="TREATMENT">None</item></item></item><item><item key="GSM94724"><item key="GROUP">D</item><item key="TREATMENT">IFN + RBV</item></item></item><item><item key="GSM947240"><item key="GROUP">C</item><item key="TREATMENT">RBV</item></item></item><item><item key="GSM947242"><item key="GROUP">A</item><item key="TREATMENT">None</item></item></item><item><item key="GSM94724"><item key="GROUP">D</item><item key="TREATMENT">IFN + RBV</item></item></item><item><item key="GSM94724"><item key="GROUP">D</item><item key="TREATMENT">IFN + RBV</item></item></item><item><item key="GSM947242"><item key="GROUP">A</item><item key="TREATMENT">None</item></item></item><item><item key="GSM947235"><item key="GROUP">B</item><item key="TREATMENT">IFN</item></item></item><item><item key="GSM947242"><item key="GROUP">A</item><item key="TREATMENT">None</item></item></item><item><item key="GSM947242"><item key="GROUP">A</item><item key="TREATMENT">None</item></item></item><item><item key="GSM947235"><item key="GROUP">B</item><item key="TREATMENT">IFN</item></item></item><item><item key="GSM947240"><item key="GROUP">C</item><item key="TREATMENT">RBV</item></item></item><item><item key="GSM947240"><item key="GROUP">C</item><item key="TREATMENT">RBV</item></item></item><item><item key="GSM947242"><item key="GROUP">A</item><item key="TREATMENT">None</item></item></item><item><item key="GSM94724"><item key="GROUP">D</item><item key="TREATMENT">IFN + RBV</item></item></item><item><item key="GSM947235"><item key="GROUP">B</item><item key="TREATMENT">IFN</item></item></item><item><item key="GSM947235"><item key="GROUP">B</item><item key="TREATMENT">IFN</item></item></item><item><item key="GSM947240"><item key="GROUP">C</item><item key="TREATMENT">RBV</item></item></item><item><item key="GSM947235"><item key="GROUP">B</item><item key="TREATMENT">IFN</item></item></item><item><item key="GSM947240"><item key="GROUP">C</item><item key="TREATMENT">RBV</item></item></item><item><item key="GSM947235"><item key="GROUP">B</item><item key="TREATMENT">IFN</item></item></item><item><item key="GSM947235"><item key="GROUP">B</item><item key="TREATMENT">IFN</item></item></item><item><item key="GSM947242"><item key="GROUP">A</item><item key="TREATMENT">None</item></item></item><item><item key="GSM947242"><item key="GROUP">A</item><item key="TREATMENT">None</item></item></item><item><item key="GSM947240"><item key="GROUP">C</item><item key="TREATMENT">RBV</item></item></item><item><item key="GSM94724"><item key="GROUP">D</item><item key="TREATMENT">IFN + RBV</item></item></item><item><item key="GSM94724"><item key="GROUP">D</item><item key="TREATMENT">IFN + RBV</item></item></item><item><item key="GSM947235"><item key="GROUP">B</item><item key="TREATMENT">IFN</item></item></item><item><item key="GSM94724"><item key="GROUP">D</item><item key="TREATMENT">IFN + RBV</item></item></item><item><item key="GSM947235"><item key="GROUP">B</item><item key="TREATMENT">IFN</item></item></item><item><item key="GSM947242"><item key="GROUP">A</item><item key="TREATMENT">None</item></item></item><item><item key="GSM94724"><item key="GROUP">D</item><item key="TREATMENT">IFN + RBV</item></item></item><item><item key="GSM947242"><item key="GROUP">A</item><item key="TREATMENT">None</item></item></item><item><item key="GSM94724"><item key="GROUP">D</item><item key="TREATMENT">IFN + RBV</item></item></item><item><item key="GSM947240"><item key="GROUP">C</item><item key="TREATMENT">RBV</item></item></item><item><item key="GSM947235"><item key="GROUP">B</item><item key="TREATMENT">IFN</item></item></item><item><item key="GSM947240"><item key="GROUP">C</item><item key="TREATMENT">RBV</item></item></item><item><item key="GSM947242"><item key="GROUP">A</item><item key="TREATMENT">None</item></item></item><item><item key="GSM947240"><item key="GROUP">C</item><item key="TREATMENT">RBV</item></item></item><item><item key="GSM947240"><item key="GROUP">C</item><item key="TREATMENT">RBV</item></item></item><item><item key="GSM947235"><item key="GROUP">B</item><item key="TREATMENT">IFN</item></item></item><item><item key="GSM94724"><item key="GROUP">D</item><item key="TREATMENT">IFN + RBV</item></item></item><item><item key="GSM947240"><item key="GROUP">C</item><item key="TREATMENT">RBV</item></item></item><item><item key="GSM94724"><item key="GROUP">D</item><item key="TREATMENT">IFN + RBV</item></item></item><item><item key="GSM947242"><item key="GROUP">A</item><item key="TREATMENT">None</item></item></item><item><item key="GSM947235"><item key="GROUP">B</item><item key="TREATMENT">IFN</item></item></item><item><item key="GSM947235"><item key="GROUP">B</item><item key="TREATMENT">IFN</item></item></item><item><item key="GSM947235"><item key="GROUP">B</item><item key="TREATMENT">IFN</item></item></item><item><item key="GSM947242"><item key="GROUP">A</item><item key="TREATMENT">None</item></item></item><item><item key="GSM947242"><item key="GROUP">A</item><item key="TREATMENT">None</item></item></item><item><item key="GSM94724"><item key="GROUP">D</item><item key="TREATMENT">IFN + RBV</item></item></item><item><item key="GSM947242"><item key="GROUP">A</item><item key="TREATMENT">None</item></item></item></item><item key="ownerprofile_id">arrayexpress_sid</item><item key="platform">4</item><item key="summary_wrapped">Background/Aims: Ribavirin improves treatment response to pegylated-interferon (PEG-IFN) in chronic hepatitis C but the mechanism remains...</item><item key="pubmed_id">23396509</item><item key="geo_gse_id">E-GEOD-38663</item><item key="owner_profile">/profile/8773/arrayexpressuploader</item><item key="factor_count">2</item><item key="sample_count">52</item><item key="tags"><item>chronic hepatitis</item><item>chronic hepatitis c</item><item>liver</item><item>peripheral</item><item>serum</item></item><item key="lastmodified">Dec.12, 2014</item><item key="is_default">False</item><item key="geo_gds_id"/><item key="slug">effect-of-ribavirin-on-viral-kinetics-and-liver-ge</item><item key="geo_id_plat">E-GEOD-38663_A-AFFY-44</item><item key="name">Effect of Ribavirin on Viral Kinetics and Liver Gene Expression in Chronic Hepatitis C</item><item key="created">Jul.12, 2014</item><item key="summary">Background/Aims: Ribavirin improves treatment response to pegylated-interferon (PEG-IFN) in chronic hepatitis C but the mechanism remains controversial. We studied correlates of response and mechanism of action of ribavirin in treatment of hepatitis C.  Methods: 70 treatment-na&#239;ve patients were randomized to 4 weeks of ribavirin (1000-1200 mg/d) or none, followed by PEG-IFN alfa-2a and ribavirin at standard doses and durations. Patients were randomized to undergo a liver biopsy either 24 hours before, or 6 hours after starting PEG-IFN. Hepatic gene expression was assessed by microarray and interferon-stimulated gene (ISG) expression quantified by the nCounter platform. Temporal changes in ISG expression were assessed by qPCR in peripheral-blood mononuclear cells (PBMC) and by serum levels of IP-10.  Results: After four weeks of ribavirin monotherapy, HCV levels decreased by 0.5&#177;0.5 log10 (p=0.009 vs. controls) and ALT by 33% (p&lt;0.001). Ribavirin pretreatment, while modestly augmenting the induction of ISGs by PEG-IFN, did not modify the virological response to subsequent PEG-IFN and ribavirin treatment. However, biochemical, but not virological response to ribavirin monotherapy predicted response to subsequent combination treatment (rapid virological response, 71% in biochemical responders vs. 22% non-responders, p=0.01; early virological response, 100% vs. 68%, p=0.03, sustained virological response 83% vs. 41%, p=0.053). Ribavirin monotherapy lowered serum IP-10 levels but had no effect on ISG expression in PBMC.   Conclusion: Ribavirin is a weak antiviral but its clinical effect in combination with PEG-IFN seems to be mediated by a separate, indirect mechanism, which may act to reset the interferon responsiveness in HCV-infected liver. Ribavirin pretreatment does not alter the clinical outcome of subsequent combination therapy. Analysis of liver biopsy samples from 52 patients under 4 different treatment conditions.</item><item key="source">http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-38663</item><item key="species">human</item><item key="sample_source">http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-38663/samples/</item></data></biogps>
