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<biogps><data><item key="owner">ArrayExpress Uploader</item><item key="pop_total">0</item><item key="species">rat</item><item key="factors"><item><item key="GSM946766"><item key="STATE">blast</item><item key="CELL TYPE">CD4+ myelin specific T cells</item><item key="DAYS AFTER ANTIGEN CHALLENGE">2</item></item></item><item><item key="GSM946766"><item key="STATE">blast</item><item key="CELL TYPE">CD4+ myelin specific T cells</item><item key="DAYS AFTER ANTIGEN CHALLENGE">2</item></item></item><item><item key="GSM946766"><item key="STATE">blast</item><item key="CELL TYPE">CD4+ myelin specific T cells</item><item key="DAYS AFTER ANTIGEN CHALLENGE">2</item></item></item><item><item key="GSM946766"><item key="STATE">blast</item><item key="CELL TYPE">CD4+ myelin specific T cells</item><item key="DAYS AFTER ANTIGEN CHALLENGE">2</item></item></item><item><item key="GSM946766"><item key="STATE">blast</item><item key="CELL TYPE">CD4+ myelin specific T cells</item><item key="DAYS AFTER ANTIGEN CHALLENGE">2</item></item></item><item><item key="GSM946776"><item key="STATE">resting</item><item key="CELL TYPE">CD4+ myelin specific T cells</item><item key="DAYS AFTER ANTIGEN CHALLENGE">7</item></item></item><item><item key="GSM946776"><item key="STATE">resting</item><item key="CELL TYPE">CD4+ myelin specific T cells</item><item key="DAYS AFTER ANTIGEN CHALLENGE">7</item></item></item><item><item key="GSM946776"><item key="STATE">resting</item><item key="CELL TYPE">CD4+ myelin specific T cells</item><item key="DAYS AFTER ANTIGEN CHALLENGE">7</item></item></item><item><item key="GSM946776"><item key="STATE">resting</item><item key="CELL TYPE">CD4+ myelin specific T cells</item><item key="DAYS AFTER ANTIGEN CHALLENGE">7</item></item></item><item><item key="GSM946784"><item key="STATE">not specified</item><item key="CELL TYPE">sorted T cell from spleen</item><item key="DAYS AFTER ANTIGEN CHALLENGE">not specified</item></item></item><item><item key="GSM946784"><item key="STATE">not specified</item><item key="CELL TYPE">sorted T cell from spleen</item><item key="DAYS AFTER ANTIGEN CHALLENGE">not specified</item></item></item></item><item key="id">9570</item><item key="ownerprofile_id">arrayexpress_sid</item><item key="platform">13</item><item key="summary_wrapped">CNS autoimmunity is induced by autoreactive  T cells reactive against CNS antigen. However how these T cells become able to transgress...</item><item key="pubmed_id">22914092</item><item key="owner_profile">/profile/8773/arrayexpressuploader</item><item key="factor_count">3</item><item key="sample_count">11</item><item key="tags"><item>brain</item><item>cell</item><item>encephalomyelitis</item><item>genome</item><item>multiple sclerosis</item><item>myelin</item><item>myelin basic protein</item><item>protein</item><item>spleen</item></item><item key="lastmodified">Jun.26, 2015</item><item key="is_default">False</item><item key="geo_gds_id"/><item key="slug">gene-expression-profiling-of-cd4myelin-basic-prote</item><item key="source">http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-38645</item><item key="geo_id_plat">E-GEOD-38645_A-AFFY-25</item><item key="name">Gene expression profiling of CD4+myelin basic protein specific T cells</item><item key="created">Jan.12, 2015</item><item key="summary">CNS autoimmunity is induced by autoreactive  T cells reactive against CNS antigen. However how these T cells become able to transgress the blood brain barrier is not CNS autoimmunity is induced by autoreactive  T cells reactive against CNS antigen. Here a gene expression profile of the pathogenic T cells in different functional states was performed. These studies were performed in a classical model of multiple sclerosis, experimental autoimmune encephalomyelitis in Lewis rats induced by transfer of CD4+myelin basic protein specific T cells. We found that on their way to the CNS T cells fundamentally reprogram their gene expression profile, by down-regulating their activation program and up-regulating cell locomotion molecules. Total RNA extracted from ex vitro myelin specific T cells (blasts and resting state, day 2 and 7 after antigen challenge respectively) or isolated from the spleen (3 days p.t.) was used to perform a genome-wide transcriptional profiling assay (Rat Genome 230, Affymetrix)-</item><item key="geo_gse_id">E-GEOD-38645</item><item key="sample_source">http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-38645/samples/</item></data></biogps>
