BioGPS
  • Home
  • Help
  • Plugins
  • Datasets
  • Sign Up
  • Login
Examples: Gene Symbol(s), Gene Ontology, Splicing plugins, Melanoma datasets
advanced
Home › Dataset Library › Expression data from fibroblasts derived from human normal oral mucosa, oral dysplasia and oral squamous cell carcinoma

Dataset: Expression data from fibroblasts derived from human normal oral mucosa, oral dysplasia and oral squamous cell carcinoma

Identification of genes that are differentially regulated in fibroblasts derived from dysplastic oral mucosa and oral squamous cell...

Registered by ArrayExpress Uploader
View Dataset

Identification of genes that are differentially regulated in fibroblasts derived from dysplastic oral mucosa and oral squamous cell carcinoma compared to fibroblasts derived from normal oral mucosa. Affymetrix microarrays were used to define differential gene expression. Populations of fibroblasts were isolated from human normal oral mucosa, oral dysplasia and oral squamous cell carcinoma, maintained in 3D collagen I biomatrices, RNA extracted and processed for Affymetrix arrays. Fibroblasts maintained as monolayers were also included as comparators.

Species:
human

Samples:
20

Source:
E-GEOD-38517

Updated:
Dec.12, 2014

Registered:
Jul.11, 2014


Factors: (via ArrayExpress)
Sample AGE SITE ORGANISM PART SEX
GSM944472 45 alveolar mucosa retromolar area normal male
GSM94447 28 alveolar mucosa retromolar area normal male
GSM944470 49 lingual mucosa oral squamous cell carcinoma male
GSM944469 82 alveolar mucosa / floor of mouth oral squamous cell carcinoma female
GSM944468 52 retromolar / base of tongue oral squamous cell carcinoma male
GSM944467 n/a n/a oral squamous cell carcinoma n/a
GSM944466 51 lingual mucosa oral squamous cell carcinoma male
GSM944470 49 lingual mucosa oral squamous cell carcinoma male
GSM944469 82 alveolar mucosa / floor of mouth oral squamous cell carcinoma female
GSM944463 80 buccal mucosa oral squamous cell carcinoma female
GSM944462 63 lingual mucosa oral squamous cell carcinoma female
GSM94446 39 floor of mouth dysplasia male
GSM944460 62 lateral border tongue dysplasia female
GSM944459 45 lingual mucosa dysplasia male
GSM944458 42 alveolar mucosa retromolar area dysplasia female
GSM94447 28 alveolar mucosa retromolar area normal male
GSM944456 25 alveolar mucosa retromolar area normal female
GSM944455 23 alveolar mucosa retromolar area normal male
GSM944456 25 alveolar mucosa retromolar area normal female
GSM944453 15 palatal mucosa normal male

Tags

  • carcinoma
  • cell
  • collagen
  • mucosa
  • oral squamous cell carcinoma
  • squamous
  • squamous cell
  • squamous cell carcinoma

Other Formats

JSON    XML
  • About
  • Blog
  • Help
  • FAQ
  • Downloads
  • API
  • iPhone App
  • Email updates
© 2019 The Scripps Research Institute. All rights reserved. (ver 59fce91 )
  • Terms of Use