Dataset: Expression data from fibroblasts derived from human normal oral mucosa, oral dysplasia and oral squamous cell carcinoma
Identification of genes that are differentially regulated in fibroblasts derived from dysplastic oral mucosa and oral squamous cell...
Identification of genes that are differentially regulated in fibroblasts derived from dysplastic oral mucosa and oral squamous cell carcinoma compared to fibroblasts derived from normal oral mucosa. Affymetrix microarrays were used to define differential gene expression. Populations of fibroblasts were isolated from human normal oral mucosa, oral dysplasia and oral squamous cell carcinoma, maintained in 3D collagen I biomatrices, RNA extracted and processed for Affymetrix arrays. Fibroblasts maintained as monolayers were also included as comparators.
- Species:
- human
- Samples:
- 20
- Source:
- E-GEOD-38517
- Updated:
- Dec.12, 2014
- Registered:
- Jul.11, 2014
Factors:
(via ArrayExpress)
Sample | AGE | SITE | ORGANISM PART | SEX |
---|---|---|---|---|
GSM944472 | 45 | alveolar mucosa retromolar area | normal | male |
GSM94447 | 28 | alveolar mucosa retromolar area | normal | male |
GSM944470 | 49 | lingual mucosa | oral squamous cell carcinoma | male |
GSM944469 | 82 | alveolar mucosa / floor of mouth | oral squamous cell carcinoma | female |
GSM944468 | 52 | retromolar / base of tongue | oral squamous cell carcinoma | male |
GSM944467 | n/a | n/a | oral squamous cell carcinoma | n/a |
GSM944466 | 51 | lingual mucosa | oral squamous cell carcinoma | male |
GSM944470 | 49 | lingual mucosa | oral squamous cell carcinoma | male |
GSM944469 | 82 | alveolar mucosa / floor of mouth | oral squamous cell carcinoma | female |
GSM944463 | 80 | buccal mucosa | oral squamous cell carcinoma | female |
GSM944462 | 63 | lingual mucosa | oral squamous cell carcinoma | female |
GSM94446 | 39 | floor of mouth | dysplasia | male |
GSM944460 | 62 | lateral border tongue | dysplasia | female |
GSM944459 | 45 | lingual mucosa | dysplasia | male |
GSM944458 | 42 | alveolar mucosa retromolar area | dysplasia | female |
GSM94447 | 28 | alveolar mucosa retromolar area | normal | male |
GSM944456 | 25 | alveolar mucosa retromolar area | normal | female |
GSM944455 | 23 | alveolar mucosa retromolar area | normal | male |
GSM944456 | 25 | alveolar mucosa retromolar area | normal | female |
GSM944453 | 15 | palatal mucosa | normal | male |