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<biogps><data><item key="owner">ArrayExpress Uploader</item><item key="pop_total">0</item><item key="species">mouse</item><item key="factors"><item><item key="GSM897562"><item key="VARIATION">wild-type</item></item></item><item><item key="GSM897562"><item key="VARIATION">wild-type</item></item></item><item><item key="GSM897562"><item key="VARIATION">wild-type</item></item></item><item><item key="GSM897565"><item key="VARIATION">EKLF knock out</item></item></item><item><item key="GSM897565"><item key="VARIATION">EKLF knock out</item></item></item><item><item key="GSM897565"><item key="VARIATION">EKLF knock out</item></item></item></item><item key="id">6824</item><item key="ownerprofile_id">arrayexpress_sid</item><item key="platform">6</item><item key="summary_wrapped">EKLF is a Kr&#252;ppel-like transcription factor identified as a transcriptional activator and chromatin modifier in erythroid cells. EKLF-...</item><item key="geo_gse_id">E-GEOD-36618</item><item key="owner_profile">/profile/8773/arrayexpressuploader</item><item key="factor_count">1</item><item key="sample_count">6</item><item key="tags"><item>anemia</item><item>cell</item><item>chromatin</item><item>protein</item><item>proximal</item></item><item key="lastmodified">Dec.12, 2014</item><item key="is_default">False</item><item key="geo_id_plat">E-GEOD-36618_A-AFFY-45</item><item key="slug">mechanisms-of-terminal-erythroid-differentiation-d</item><item key="geo_gds_id"/><item key="name">Mechanisms of terminal erythroid differentiation defect in EKLF-deficient mice</item><item key="created">Nov.12, 2014</item><item key="summary">EKLF is a Kr&#252;ppel-like transcription factor identified as a transcriptional activator and chromatin modifier in erythroid cells. EKLF-deficient (Eklf -/-) mice die at day 14.5 of gestation from severe anemia. In this study, we demonstrate that early progenitor cells fail to undergo terminal erythroid differention in Eklf -/- embryos. To discover potential EKLF target genes responsible for the failure of erythropoiesis, transcriptional profiling was performed with RNA from wild type and Eklf -/- early erythroid progenitor cells. These analyses identified significant perturbation of a network of genes involved in cell cycle regulation, with the critical regulator of the cell cycle, E2f2, at a hub. E2f2 mRNA and protein levels were markedly decreased in Eklf -/- early erythroid progenitor cells, which showed a delay in the G1-to-S-phase transition. Chromatin immunoprecipitation analysis demonstrated EKLF occupancy at the proximal E2f2 promoter in vivo. Consistent with the role of EKLF as a chromatin modifier, EKLF binding-sites in the E2f2 promoter were located in a region of EKLF-dependent DNase I sensitivity in early erythroid progenitor cells. We propose a model in which EKLF-dependent activation and modification of the E2f2 locus is required for cell cycle progression preceding terminal erythroid differentiation. RNA was isolated from flow-sorted early erythroid progenitors in 13.5 day old fetal livers from EKLF knock out mice (n=3 fetal livers) and wild-type control mice (n=3 fetal livers) for gene expression analysis</item><item key="source">http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-36618</item><item key="sample_source">http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-36618/samples/</item></data></biogps>
