<?xml version="1.0" encoding="ASCII"?>
<biogps><data><item key="owner">ArrayExpress Uploader</item><item key="ownerprofile_id">arrayexpress_sid</item><item key="species">mouse</item><item key="factors"><item><item key="GSM892943"><item key="CO-CULTURED WITH">CLL V172</item><item key="VARIATION">Nemo wild type</item></item></item><item><item key="GSM892944"><item key="CO-CULTURED WITH">CLL V128</item><item key="VARIATION">Nemo wild type</item></item></item><item><item key="GSM892945"><item key="CO-CULTURED WITH">CLL V227</item><item key="VARIATION">Nemo wild type</item></item></item><item><item key="GSM892946"><item key="CO-CULTURED WITH">CLL V163</item><item key="VARIATION">Nemo wild type</item></item></item><item><item key="GSM892947"><item key="CO-CULTURED WITH">CLL V147</item><item key="VARIATION">Nemo wild type</item></item></item><item><item key="GSM892948"><item key="CO-CULTURED WITH">CLL V211</item><item key="VARIATION">Nemo wild type</item></item></item><item><item key="GSM892949"><item key="CO-CULTURED WITH">CLL V132</item><item key="VARIATION">Nemo wild type</item></item></item><item><item key="GSM892950"><item key="CO-CULTURED WITH">CLL V172</item><item key="VARIATION">Nemo knockout</item></item></item><item><item key="GSM89295"><item key="CO-CULTURED WITH">CLL V128</item><item key="VARIATION">Nemo knockout</item></item></item><item><item key="GSM892952"><item key="CO-CULTURED WITH">CLL V227</item><item key="VARIATION">Nemo knockout</item></item></item><item><item key="GSM892953"><item key="CO-CULTURED WITH">CLL V163</item><item key="VARIATION">Nemo knockout</item></item></item><item><item key="GSM892954"><item key="CO-CULTURED WITH">CLL V147</item><item key="VARIATION">Nemo knockout</item></item></item><item><item key="GSM892955"><item key="CO-CULTURED WITH">CLL V211</item><item key="VARIATION">Nemo knockout</item></item></item><item><item key="GSM892956"><item key="CO-CULTURED WITH">CLL V132</item><item key="VARIATION">Nemo knockout</item></item></item></item><item key="id">6811</item><item key="pop_total">0</item><item key="platform">6</item><item key="summary_wrapped">Tumor cell survival critically depends on heterotypic communication with benign cells in the microenvironment. Here we describe a novel...</item><item key="geo_gse_id">E-GEOD-36415</item><item key="owner_profile">/profile/8773/arrayexpressuploader</item><item key="factor_count">2</item><item key="sample_count">14</item><item key="tags"><item>bone</item><item>bone marrow</item><item>breast</item><item>cancer</item><item>cell</item><item>chronic lymphocytic leukemia</item><item>leukemia</item></item><item key="lastmodified">Dec.12, 2014</item><item key="is_default">False</item><item key="geo_id_plat">E-GEOD-36415_A-AFFY-45</item><item key="slug">effect-of-nf-kappab-activation-in-bone-marrow-stro</item><item key="geo_gds_id"/><item key="name">Effect of NF-kappaB activation in bone marrow stromal cells co-cultured with CLL cells</item><item key="created">Nov.12, 2014</item><item key="summary">Tumor cell survival critically depends on heterotypic communication with benign cells in the microenvironment. Here we describe a novel survival signaling pathway activated in stromal cells by contact to B-cells from chronic lymphocytic leukemia (CLL) patients.  The expression of PKC-&#946;II and the subsequent activation of NF-&#954;B in bone marrow stromal cells is a prerequisite to support the survival of malignant B-cells. PKC-&#946; knockout mice are insusceptible to CLL-transplantations, underscoring the in vivo significance of the PKC-&#946;II- NF-&#954;B signaling pathway in the tumor microenvironment. Upregulated stromal PKC-&#946;II in biopsies from CLL, breast- and pancreatic- cancer patients suggest that this pathway may commonly be activated in a variety of malignancies. We used microarrays to determine Nemo/ IKK-gamma dependent gene expression changes in bone marrow stromal cells (BMSCs) induced by co-culturing with leukemic B-cells (CLL) We compared mouse BMSC cells from Nemo knockout cells (Nemo+CRE)  and Nemo wild type cells (Nemo-CRE) co-cultured for 5 days with leukemic B-cells microarray analysis on Affymetrix MG-430_2.0 arrays..</item><item key="source">http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-36415</item><item key="sample_source">http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-36415/samples/</item></data></biogps>
