<?xml version="1.0" encoding="ASCII"?>
<biogps><data><item key="owner">ArrayExpress Uploader</item><item key="pop_total">0</item><item key="species">human</item><item key="factors"><item><item key="GSM873833"><item key="PROTOCOL">stimuated with HC1259 plasma</item></item></item><item><item key="GSM873834"><item key="PROTOCOL">stimuated with HC1369 plasma</item></item></item><item><item key="GSM873835"><item key="PROTOCOL">stimuated with HC381 plasma</item></item></item><item><item key="GSM873836"><item key="PROTOCOL">stimuated with HC389 plasma</item></item></item><item><item key="GSM873837"><item key="PROTOCOL">stimuated with HC1534 plasma</item></item></item><item><item key="GSM873838"><item key="PROTOCOL">stimuated with HC1730 plasma</item></item></item><item><item key="GSM873839"><item key="PROTOCOL">stimuated with HC217 plasma</item></item></item><item><item key="GSM873840"><item key="PROTOCOL">stimuated with HC226 plasma</item></item></item><item><item key="GSM87384"><item key="PROTOCOL">stimuated with HC2301 plasma</item></item></item><item><item key="GSM873842"><item key="PROTOCOL">stimuated with HC294 plasma</item></item></item><item><item key="GSM873843"><item key="PROTOCOL">stimuated with HC295 plasma</item></item></item><item><item key="GSM873844"><item key="PROTOCOL">stimuated with HC385 plasma</item></item></item><item><item key="GSM873845"><item key="PROTOCOL">stimuated with HC390 plasma</item></item></item><item><item key="GSM873846"><item key="PROTOCOL">stimuated with HC393 plasma</item></item></item><item><item key="GSM873847"><item key="PROTOCOL">stimuated with HC1006 plasma</item></item></item><item><item key="GSM873848"><item key="PROTOCOL">stimuated with HC272 plasma</item></item></item><item><item key="GSM873849"><item key="PROTOCOL">stimuated with HC285 plasma</item></item></item><item><item key="GSM873850"><item key="PROTOCOL">stimuated with HC233 plasma</item></item></item><item><item key="GSM87385"><item key="PROTOCOL">stimuated with gram-positive pneumonia patient 1353 plasma</item></item></item><item><item key="GSM873852"><item key="PROTOCOL">stimuated with gram-positive pneumonia patient 1382 plasma</item></item></item><item><item key="GSM873853"><item key="PROTOCOL">stimuated with gram-positive pneumonia patient 1403 plasma</item></item></item><item><item key="GSM873854"><item key="PROTOCOL">stimuated with gram-positive pneumonia patient 1410 plasma</item></item></item><item><item key="GSM873855"><item key="PROTOCOL">stimuated with gram-positive pneumonia patient 1412 plasma</item></item></item><item><item key="GSM873856"><item key="PROTOCOL">stimuated with gram-positive pneumonia patient 1224 plasma</item></item></item><item><item key="GSM873857"><item key="PROTOCOL">stimuated with gram-positive pneumonia patient 1275 plasma</item></item></item><item><item key="GSM873858"><item key="PROTOCOL">stimuated with gram-positive pneumonia patient 1287 plasma</item></item></item><item><item key="GSM873859"><item key="PROTOCOL">stimuated with gram-positive pneumonia patient 1325 plasma</item></item></item><item><item key="GSM873860"><item key="PROTOCOL">stimuated with gram-positive pneumonia patient 1344 plasma</item></item></item></item><item key="id">4417</item><item key="ownerprofile_id">arrayexpress_sid</item><item key="platform">4</item><item key="summary_wrapped">The complex milieu of inflammatory mediators associated with many diseases is often too dilute to directly measure in the periphery,...</item><item key="geo_gse_id">E-GEOD-35716</item><item key="owner_profile">/profile/8773/arrayexpressuploader</item><item key="factor_count">1</item><item key="sample_count">28</item><item key="tags"><item>bacterial pneumonia</item><item>peripheral</item><item>pneumonia</item></item><item key="lastmodified">Dec.12, 2014</item><item key="is_default">False</item><item key="geo_gds_id"/><item key="slug">transcriptional-signatures-as-a-disease-specific-3</item><item key="geo_id_plat">E-GEOD-35716_A-AFFY-44</item><item key="name">Transcriptional Signatures as a Disease-Specific and Predictive Inflammatory Biomarker for Type 1 Diabetes [Pneu_S3S24_10Pneu_4HC]</item><item key="created">Sep.19, 2014</item><item key="summary">The complex milieu of inflammatory mediators associated with many diseases is often too dilute to directly measure in the periphery, necessitating development of more sensitive measurements suitable for mechanistic studies, earlier diagnosis, guiding selection of therapy, and monitoring interventions.  Previously, we determined that plasma of recent-onset (RO) Type 1 diabetes (T1D) patients induce a proinflammatory transcriptional signature in fresh peripheral blood mononuclear cells (PBMC) relative to that of unrelated healthy controls (HC).  Here, using an optimized cryopreserved PBMC-based protocol, we compared the signature found between unrelated healthy controls and patients with bacterial pneumonia. UPN727 cells were stimulated with either plasma from unrelated healthy controls (n=18) or plasma from patients with bacterial pneumonia (n=10). Gene expression analysis was perfromed in order to evaluate the transcriptional signature associated with bacterial pneumonia.</item><item key="source">http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-35716</item><item key="sample_source">http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-35716/samples/</item></data></biogps>
