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CLASSIFICATION">M5a</item></item></item><item><item key="GSM856256"><item key="FLT3 STATUS">internal tandem duplication (ITD)</item><item key="SET">test</item><item key="NPM STATUS">mutated</item><item key="FAB CLASSIFICATION">M5a</item></item></item><item><item key="GSM856254"><item key="FLT3 STATUS">internal tandem duplication (ITD)</item><item key="SET">test</item><item key="NPM STATUS">mutated</item><item key="FAB CLASSIFICATION">M5</item></item></item><item><item key="GSM856267"><item key="FLT3 STATUS">WT</item><item key="SET">test</item><item key="NPM STATUS">mutated</item><item key="FAB CLASSIFICATION">M4</item></item></item><item><item key="GSM856252"><item key="FLT3 STATUS">internal tandem duplication (ITD)/D835 mutation</item><item key="SET">test</item><item key="NPM STATUS">mutated</item><item key="FAB CLASSIFICATION">M4</item></item></item><item><item key="GSM856266"><item key="FLT3 STATUS">internal tandem duplication (ITD)</item><item key="SET">test</item><item key="NPM STATUS">mutated</item><item key="FAB CLASSIFICATION">M4</item></item></item><item><item key="GSM856266"><item key="FLT3 STATUS">internal tandem duplication (ITD)</item><item key="SET">test</item><item key="NPM STATUS">mutated</item><item key="FAB CLASSIFICATION">M4</item></item></item><item><item key="GSM856266"><item key="FLT3 STATUS">internal tandem duplication (ITD)</item><item key="SET">test</item><item key="NPM STATUS">mutated</item><item key="FAB CLASSIFICATION">M4</item></item></item><item><item key="GSM856248"><item key="FLT3 STATUS">D835 mutation</item><item key="SET">test</item><item key="NPM STATUS">mutated</item><item key="FAB CLASSIFICATION">M4</item></item></item><item><item key="GSM856247"><item key="FLT3 STATUS">WT</item><item key="SET">test</item><item key="NPM STATUS">mutated</item><item key="FAB CLASSIFICATION">M2</item></item></item><item><item key="GSM856247"><item key="FLT3 STATUS">WT</item><item key="SET">test</item><item key="NPM STATUS">mutated</item><item key="FAB CLASSIFICATION">M2</item></item></item><item><item key="GSM856245"><item key="FLT3 STATUS">internal tandem duplication (ITD)</item><item key="SET">test</item><item key="NPM STATUS">mutated</item><item key="FAB CLASSIFICATION">M2</item></item></item><item><item key="GSM856244"><item key="FLT3 STATUS">D835 mutation</item><item key="SET">test</item><item key="NPM STATUS">mutated</item><item key="FAB CLASSIFICATION">M2</item></item></item><item><item key="GSM856265"><item key="FLT3 STATUS">WT</item><item key="SET">test</item><item key="NPM STATUS">mutated</item><item key="FAB CLASSIFICATION">M1</item></item></item><item><item key="GSM856242"><item key="FLT3 STATUS">internal tandem duplication (ITD)</item><item key="SET">test</item><item key="NPM STATUS">mutated</item><item key="FAB CLASSIFICATION">M1</item></item></item><item><item key="GSM85624"><item key="FLT3 STATUS">internal tandem duplication (ITD)</item><item key="SET">training</item><item key="NPM STATUS">wild-type</item><item key="FAB CLASSIFICATION">M2</item></item></item><item><item key="GSM856240"><item key="FLT3 STATUS">internal tandem duplication (ITD)</item><item key="SET">training</item><item key="NPM STATUS">wild-type</item><item key="FAB CLASSIFICATION">M5a</item></item></item><item><item key="GSM856239"><item key="FLT3 STATUS">WT</item><item key="SET">training</item><item key="NPM STATUS">wild-type</item><item key="FAB CLASSIFICATION">M4</item></item></item><item><item key="GSM856239"><item key="FLT3 STATUS">WT</item><item key="SET">training</item><item key="NPM STATUS">wild-type</item><item key="FAB CLASSIFICATION">M4</item></item></item><item><item key="GSM856237"><item key="FLT3 STATUS">WT</item><item key="SET">training</item><item key="NPM STATUS">wild-type</item><item key="FAB CLASSIFICATION">M2</item></item></item><item><item key="GSM856236"><item key="FLT3 STATUS">WT</item><item key="SET">training</item><item key="NPM STATUS">wild-type</item><item key="FAB CLASSIFICATION">M1</item></item></item><item><item key="GSM856236"><item key="FLT3 STATUS">WT</item><item key="SET">training</item><item key="NPM STATUS">wild-type</item><item key="FAB CLASSIFICATION">M1</item></item></item><item><item key="GSM856236"><item key="FLT3 STATUS">WT</item><item key="SET">training</item><item key="NPM STATUS">wild-type</item><item key="FAB CLASSIFICATION">M1</item></item></item><item><item key="GSM856233"><item key="FLT3 STATUS">WT</item><item key="SET">training</item><item key="NPM STATUS">wild-type</item><item key="FAB CLASSIFICATION">M0</item></item></item><item><item key="GSM856232"><item key="FLT3 STATUS">internal tandem duplication (ITD)</item><item key="SET">training</item><item key="NPM STATUS">wild-type</item><item key="FAB CLASSIFICATION">M0</item></item></item><item><item key="GSM85623"><item key="FLT3 STATUS">WT</item><item key="SET">training</item><item key="NPM STATUS">mutated</item><item key="FAB CLASSIFICATION">M5b</item></item></item><item><item key="GSM856230"><item key="FLT3 STATUS">D835 mutation</item><item key="SET">training</item><item key="NPM STATUS">mutated</item><item key="FAB CLASSIFICATION">M5b</item></item></item><item><item key="GSM856230"><item key="FLT3 STATUS">D835 mutation</item><item key="SET">training</item><item key="NPM STATUS">mutated</item><item key="FAB CLASSIFICATION">M5b</item></item></item><item><item key="GSM856228"><item key="FLT3 STATUS">WT</item><item key="SET">training</item><item key="NPM STATUS">mutated</item><item key="FAB CLASSIFICATION">M5a</item></item></item><item><item key="GSM856228"><item key="FLT3 STATUS">WT</item><item key="SET">training</item><item key="NPM STATUS">mutated</item><item key="FAB CLASSIFICATION">M5a</item></item></item><item><item key="GSM856228"><item key="FLT3 STATUS">WT</item><item key="SET">training</item><item key="NPM STATUS">mutated</item><item key="FAB CLASSIFICATION">M5a</item></item></item><item><item key="GSM856225"><item key="FLT3 STATUS">WT</item><item key="SET">training</item><item key="NPM STATUS">mutated</item><item key="FAB CLASSIFICATION">M4</item></item></item><item><item key="GSM856225"><item key="FLT3 STATUS">WT</item><item key="SET">training</item><item key="NPM STATUS">mutated</item><item key="FAB CLASSIFICATION">M4</item></item></item><item><item key="GSM856223"><item key="FLT3 STATUS">internal tandem duplication (ITD)</item><item key="SET">training</item><item key="NPM STATUS">mutated</item><item key="FAB CLASSIFICATION">M4</item></item></item><item><item key="GSM856223"><item key="FLT3 STATUS">internal tandem duplication (ITD)</item><item key="SET">training</item><item key="NPM STATUS">mutated</item><item key="FAB CLASSIFICATION">M4</item></item></item><item><item key="GSM85622"><item key="FLT3 STATUS">WT</item><item key="SET">training</item><item key="NPM STATUS">mutated</item><item key="FAB CLASSIFICATION">M2</item></item></item><item><item key="GSM85622"><item key="FLT3 STATUS">WT</item><item key="SET">training</item><item key="NPM STATUS">mutated</item><item key="FAB CLASSIFICATION">M2</item></item></item><item><item key="GSM85622"><item key="FLT3 STATUS">WT</item><item key="SET">training</item><item key="NPM STATUS">mutated</item><item key="FAB CLASSIFICATION">M2</item></item></item><item><item key="GSM85622"><item key="FLT3 STATUS">WT</item><item key="SET">training</item><item key="NPM STATUS">mutated</item><item key="FAB CLASSIFICATION">M2</item></item></item><item><item key="GSM856217"><item key="FLT3 STATUS">internal tandem duplication (ITD)</item><item key="SET">training</item><item key="NPM STATUS">mutated</item><item key="FAB CLASSIFICATION">M2</item></item></item><item><item key="GSM856217"><item key="FLT3 STATUS">internal tandem duplication (ITD)</item><item key="SET">training</item><item key="NPM STATUS">mutated</item><item key="FAB CLASSIFICATION">M2</item></item></item><item><item key="GSM856217"><item key="FLT3 STATUS">internal tandem duplication (ITD)</item><item key="SET">training</item><item key="NPM STATUS">mutated</item><item key="FAB CLASSIFICATION">M2</item></item></item><item><item key="GSM856217"><item key="FLT3 STATUS">internal tandem duplication (ITD)</item><item key="SET">training</item><item key="NPM STATUS">mutated</item><item key="FAB CLASSIFICATION">M2</item></item></item><item><item key="GSM856217"><item key="FLT3 STATUS">internal tandem duplication (ITD)</item><item key="SET">training</item><item key="NPM STATUS">mutated</item><item key="FAB CLASSIFICATION">M2</item></item></item><item><item key="GSM856217"><item key="FLT3 STATUS">internal tandem duplication (ITD)</item><item key="SET">training</item><item key="NPM STATUS">mutated</item><item key="FAB CLASSIFICATION">M2</item></item></item><item><item key="GSM8562"><item key="FLT3 STATUS">WT</item><item key="SET">training</item><item key="NPM STATUS">mutated</item><item key="FAB CLASSIFICATION">M1</item></item></item><item><item key="GSM8562"><item key="FLT3 STATUS">WT</item><item key="SET">training</item><item key="NPM STATUS">mutated</item><item key="FAB CLASSIFICATION">M1</item></item></item><item><item key="GSM8562"><item key="FLT3 STATUS">WT</item><item key="SET">training</item><item key="NPM STATUS">mutated</item><item key="FAB CLASSIFICATION">M1</item></item></item><item><item key="GSM856208"><item key="FLT3 STATUS">internal tandem duplication (ITD)</item><item key="SET">training</item><item key="NPM STATUS">mutated</item><item key="FAB CLASSIFICATION">M1</item></item></item><item><item key="GSM856208"><item key="FLT3 STATUS">internal tandem duplication (ITD)</item><item key="SET">training</item><item key="NPM STATUS">mutated</item><item key="FAB CLASSIFICATION">M1</item></item></item><item><item key="GSM856208"><item key="FLT3 STATUS">internal tandem duplication (ITD)</item><item key="SET">training</item><item key="NPM STATUS">mutated</item><item key="FAB CLASSIFICATION">M1</item></item></item><item><item key="GSM856208"><item key="FLT3 STATUS">internal tandem duplication (ITD)</item><item key="SET">training</item><item key="NPM STATUS">mutated</item><item key="FAB CLASSIFICATION">M1</item></item></item><item><item key="GSM856208"><item key="FLT3 STATUS">internal tandem duplication (ITD)</item><item key="SET">training</item><item key="NPM STATUS">mutated</item><item key="FAB CLASSIFICATION">M1</item></item></item><item><item key="GSM856208"><item key="FLT3 STATUS">internal tandem duplication (ITD)</item><item key="SET">training</item><item key="NPM STATUS">mutated</item><item key="FAB CLASSIFICATION">M1</item></item></item></item><item key="ownerprofile_id">arrayexpress_sid</item><item key="platform">3</item><item key="summary_wrapped">Approximately one third of acute myeloid leukemias (AMLs) are characterized by aberrant cytoplasmic localization of Nucleophosmin (NPMc+...</item><item key="pubmed_id">15831697</item><item key="geo_gse_id">E-GEOD-34860</item><item key="owner_profile">/profile/8773/arrayexpressuploader</item><item key="factor_count">4</item><item key="sample_count">78</item><item key="tags"><item>cell</item><item>cell phenotype</item><item>stem cell</item><item>tyrosine</item></item><item key="lastmodified">Dec.12, 2014</item><item key="is_default">False</item><item key="geo_gds_id"/><item key="slug">gene-expression-profiling-in-acute-myeloid-leukemi</item><item key="geo_id_plat">E-GEOD-34860_A-AFFY-33</item><item key="name">Gene expression profiling in acute myeloid leukemia with mutated NPM</item><item key="created">Jun.18, 2014</item><item key="summary">Approximately one third of acute myeloid leukemias (AMLs) are characterized by aberrant cytoplasmic localization of Nucleophosmin (NPMc+ AML), consequent to mutations in the NPM putative nucleolar localization signal.  These events are mutually exclusive with the major AML-associated chromosomal rearrangements, and are frequently associated with normal karyotype, Fms-like tyrosine kinase (FLT3) mutations and multilineage involvement. We report the gene expression profiles of 78 de novo AMLs (72 with normal karyotype; 6 with non-major chromosomal abnormalities) that were characterized for the subcellular localization and mutation status of NPM. Unsupervised clustering clearly separated NPMc+ from NPMc- AMLs, regardless of the presence of FLT3 mutations or non-major chromosomal rearrangements, supporting the concept that NPMc+ AML represents a distinct entity. The molecular signature of NPMc+ AML includes up-regulation of several genes putatively involved in the maintenance of a stem cell phenotype, suggesting that NPMc+ AML may derive from a multipotent hematopoietic progenitor. 78 de novo AMLs, negative for AML-associated chromosomal translocations at the cytogenetic and/or molecular level.</item><item key="source">http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-34860</item><item key="species">human</item><item key="sample_source">http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-34860/samples/</item></data></biogps>
