BioGPS
  • Home
  • Help
  • Plugins
  • Datasets
  • Sign Up
  • Login
Examples: Gene Symbol(s), Gene Ontology, Splicing plugins, Melanoma datasets
advanced
Home › Dataset Library › Transcription profiling by array of BEAS 2B cells treated with N-hydroxylated PhIP

Dataset: Transcription profiling by array of BEAS 2B cells treated with N-hydroxylated PhIP

The estimation of acceptable exposure levels for genotoxicants is accomplished by defining thresholds from apical endpoints, or by...

Registered by ArrayExpress Uploader
View Dataset

The estimation of acceptable exposure levels for genotoxicants is accomplished by defining thresholds from apical endpoints, or by modeling points of departure from data that are acquired from high dose experiments, followed by linear extrapolation of the response through zero. We recently proposed that low dose exposure-induced transcriptional changes that can be linked to mechanisms of pathogenesis could provide a more sensitive alternative for defining thresholds for biological responses. In the present study, we used gene expression profiling data to determine an empirical transcriptional dose response threshold for the food and tobacco smoke borne carcinogen, 2-amino-1-methyl-6-phenylimidazo[4,5]pyridine (PhIP) in human BEAS-2B bronchial epithelial cells exposed to concentrations of N-hydroxylated PhIP ranging from 1 x 10-6 to 5 x 10-10 M. The goal was to determine transcriptional dose response threshold (NOTEL) of human BEAS-2B bronchial epithelial cells exposed to the food and tobacco smoke borne carcinogen, 2-hydroxy-mino-1-methyl-6-phenylimidazo[4,5]pyridine (N-OH-PhIP). BEAS-2B cells at ~ 70% confluence were treated with doses of N-OH-PhIP that varied over five orders or magnitude. Triplicate cell cultures were exposed to either DMS (control) or nine different doses of N-OH-PhIP at concentrations ranging from 1 x 10-6 to 5 x 10-10 M.

Species:
human

Samples:
29

Source:
E-GEOD-34635

Updated:
Dec.12, 2014

Registered:
Sep.17, 2014


Factors: (via ArrayExpress)
Sample dose compound
GSM852236 DMSO
GSM852236 DMSO
GSM852236 DMSO
GSM852239 500 N-hydroxylated PhIP
GSM852239 500 N-hydroxylated PhIP
GSM852239 500 N-hydroxylated PhIP
GSM852242 1000 N-hydroxylated PhIP
GSM852242 1000 N-hydroxylated PhIP
GSM852242 1000 N-hydroxylated PhIP
GSM852245 100 N-hydroxylated PhIP
GSM852245 100 N-hydroxylated PhIP
GSM852245 100 N-hydroxylated PhIP
GSM852248 50 N-hydroxylated PhIP
GSM852248 50 N-hydroxylated PhIP
GSM852248 50 N-hydroxylated PhIP
GSM85225 10 N-hydroxylated PhIP
GSM85225 10 N-hydroxylated PhIP
GSM85225 10 N-hydroxylated PhIP
GSM852254 5 N-hydroxylated PhIP
GSM852254 5 N-hydroxylated PhIP
GSM852254 5 N-hydroxylated PhIP
GSM852257 1 N-hydroxylated PhIP
GSM852257 1 N-hydroxylated PhIP
GSM852257 1 N-hydroxylated PhIP
GSM852260 0.5 N-hydroxylated PhIP
GSM852260 0.5 N-hydroxylated PhIP
GSM852262 0.1 N-hydroxylated PhIP
GSM852262 0.1 N-hydroxylated PhIP
GSM852262 0.1 N-hydroxylated PhIP

Tags

  • apical
  • cell

Other Formats

JSON    XML
  • About
  • Blog
  • Help
  • FAQ
  • Downloads
  • API
  • iPhone App
  • Email updates
© 2025 The Scripps Research Institute. All rights reserved. (ver 94eefe6 )
  • Terms of Use