BioGPS
  • Home
  • Help
  • Plugins
  • Datasets
  • Sign Up
  • Login
Examples: Gene Symbol(s), Gene Ontology, Splicing plugins, Melanoma datasets
advanced
Home › Dataset Library › Transcription profiling of rat brain tissue samples from cocaine-treated and saline-treated control animals

Dataset: Transcription profiling of rat brain tissue samples from cocaine-treated and saline-treated control animals

The 10 samples below represent a study where gene expression levels were measured in 5 different parts of the rat brain under cocaine-...

Registered by ArrayExpress Uploader
View Dataset

The 10 samples below represent a study where gene expression levels were measured in 5 different parts of the rat brain under cocaine-treated (GSM4696, GSM4698 - GSM4701) and saline-treated control (GSM4702 - GSM4706) conditions. The regions studied were amygdala (amy), caudate putamen (cpu), nucleus acumbens (na), prefrontal cortex (cpu), and the ventral tegmental area (vta). The data were analyzed using two different computational techniques, viz. singular value decomposition (SVD) and self-organizing maps (SOM), to identify a common set of genes that were regulated by cocaine administration.

Species:
rat

Samples:
10

Source:
E-GEOD-340

Updated:
Feb.09, 2015

Registered:
Jan.11, 2015


Factors: (via ArrayExpress)
Sample Compound OrganismPart
GSE340GSM4696 cocaine amygdala
GSE340GSM4702 saline amygdala
GSE340GSM4698 cocaine caudate putamen
GSE340GSM4703 saline caudate putamen
GSE340GSM4699 cocaine nucleus acumbens
GSE340GSM4704 saline nucleus acumbens
GSE340GSM4700 cocaine prefrontal cortex
GSE340GSM4705 saline prefrontal cortex
GSE340GSM4701 cocaine ventral tegmental area
GSE340GSM4706 saline ventral tegmental area

Tags

  • amygdala
  • brain
  • cortex
  • prefrontal cortex
  • putamen
  • ventral
  • ventral tegmental area

Other Formats

JSON    XML
  • About
  • Blog
  • Help
  • FAQ
  • Downloads
  • API
  • iPhone App
  • Email updates
© 2023 The Scripps Research Institute. All rights reserved. (ver 94eefe6 )
  • Terms of Use