Dataset: Transcription profiling of rat brain tissue samples from cocaine-treated and saline-treated control animals
The 10 samples below represent a study where gene expression levels were measured in 5 different parts of the rat brain under cocaine-...
The 10 samples below represent a study where gene expression levels were measured in 5 different parts of the rat brain under cocaine-treated (GSM4696, GSM4698 - GSM4701) and saline-treated control (GSM4702 - GSM4706) conditions. The regions studied were amygdala (amy), caudate putamen (cpu), nucleus acumbens (na), prefrontal cortex (cpu), and the ventral tegmental area (vta). The data were analyzed using two different computational techniques, viz. singular value decomposition (SVD) and self-organizing maps (SOM), to identify a common set of genes that were regulated by cocaine administration.
- Species:
- rat
- Samples:
- 10
- Source:
- E-GEOD-340
- Updated:
- Feb.09, 2015
- Registered:
- Jan.11, 2015
Factors:
(via ArrayExpress)
Sample | OrganismPart | Compound |
---|---|---|
GSE340GSM4696 | amygdala | cocaine |
GSE340GSM4702 | amygdala | saline |
GSE340GSM4698 | caudate putamen | cocaine |
GSE340GSM4703 | caudate putamen | saline |
GSE340GSM4699 | nucleus acumbens | cocaine |
GSE340GSM4704 | nucleus acumbens | saline |
GSE340GSM4700 | prefrontal cortex | cocaine |
GSE340GSM4705 | prefrontal cortex | saline |
GSE340GSM4701 | ventral tegmental area | cocaine |
GSE340GSM4706 | ventral tegmental area | saline |