ArrayExpress Uploader0human3-weekCaco-2 cellsnot specifiedcolonnot specified3-weekCaco-2 cellsnot specifiedcolonnot specified3-weekCaco-2 cellsnot specifiedcolonnot specified3-weekHT29 cellsnot specifiedcolonnot specified3-weekHT29 cellsnot specifiedcolonnot specified3-weekHT29 cellsnot specifiedcolonnot specified3-weekT84 cellsnot specifiedcolon, metastatic site lungnot specified3-weekT84 cellsnot specifiedcolon, metastatic site lungnot specified3-weekT84 cellsnot specifiedcolon, metastatic site lungnot specifiednot specifiedSW480 cellsnot specifiedcolonnot specifiednot specifiedSW480 cellsnot specifiedcolonnot specifiednot specifiedSW480 cellsnot specifiedcolonnot specifiednot specifiedLS174T cellsnot specifiedcolonnot specifiednot specifiedLS174T cellsnot specifiedcolonnot specifiednot specifiedLS174T cellsnot specifiedcolonnot specifiedgrown on filtersCaco-2LD cellsnot specifiedcolonnot specifiedgrown on filtersCaco-2LD cellsnot specifiedcolonnot specifiedgrown on filtersCaco-2LD cellsnot specifiedcolonnot specifiednot specifiedCaco-2 cellsnot specifiedcolonnot specified3-weekCaco-2 cellsnot specifiedcolonnot specifiedgrown on filtersCacoReady cellsnot specifiedcolonnot specifiedgrown on filtersCacoReady cellsnot specifiedcolonnot specifiedgrown on filtersCacoReady cellsnot specifiedcolonnot specifiedexposed to shipping media, grown on filtersCacoReady cellsnot specifiedcolonnot specifiedexposed to shipping media, grown on filtersCacoReady cellsnot specifiedcolonnot specifiedexposed to shipping media, grown on filtersCacoReady cellsnot specifiedcolonnot specified3-week , grown on filtersCDX2-knockdown Caco-2 cellsnot specifiedcolonnot specified3-week , grown on filtersCDX2-knockdown Caco-2 cellsnot specifiedcolonnot specified3-week , grown on filtersnegative control Caco-2 cellsnot specifiedcolonnot specifiednot specifiednot specifiedtumor cellscolonyesnot specifiednot specifiedtumor cellscolonyesnot specifiednot specifiedtumor cellscolonyesnot specifiednot specifiednormal colonocytescolonyesnot specifiednot specifiednormal colonocytescolonyesnot specifiednot specifiednormal colonocytescolonyesnot specifiednot specifiedprimary cell cultures of cancer-associated fibroblastscolonnonot specifiednot specifiedprimary cell cultures of cancer-associated fibroblastscolonnonot specifiednot specifiedprimary cell cultures of cancer-associated fibroblastscolonnonot specifiednot specifiednormal enterocytesileumyesnot specifiednot specifiednormal enterocytesileumyesnot specifiednot specifiednormal enterocytesileumyesnot specifiednot specifiednormal enterocytesjejunumyesnot specifiednot specifiednormal enterocytesjejunumyes4147arrayexpress_sid4The objective of this study was to make use of gene expression signatures and functional assays to delineate differences between various...E-GEOD-30292/profile/8773/arrayexpressuploader543carcinomacellcoloncolon carcinomagenomeileumintestinal epitheliumjejunumDec.12, 2014Falseestablishment-of-objective-criteria-for-selectingE-GEOD-30292_A-AFFY-44Establishment of objective criteria for selecting relevant intestinal cell-based modelsSep.16, 2014The objective of this study was to make use of gene expression signatures and functional assays to delineate differences between various intestinal colon carcinoma cell lines and normal intestinal epithelium to assess their appropriateness as a tumor model or for drug absorption studies. [Cell lines] Total RNA of biological replicate samples (i.e.different passages) from a panel of cell lines was collected and resulting amplified cRNA hybridized to Affymetrix Human Genome U133 Plus 2.0 arrays. Samples are labeled as follows: SampleNumber_CellLine. [Laser dissected tumor cells (LDM)] Total RNA of three different samples laser dissected tumor cells, normal colonocytes, and enterocytes of ileum and two samples of jejunum was collected and resulting amplified cRNA hybridized to Affymetrix Human Genome U133 Plus 2.0 arrays. Samples are labeled as follows: SampleNumber_TissueType_Origin.http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-30292http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-30292/samples/