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<biogps><data><item key="owner">ArrayExpress Uploader</item><item key="ownerprofile_id">arrayexpress_sid</item><item key="species">mouse</item><item key="factors"><item><item key="GSM692432"><item key="GENOTYPE">p53-/-</item><item key="COMPOUND">vehicle</item></item></item><item><item key="GSM692432"><item key="GENOTYPE">p53-/-</item><item key="COMPOUND">vehicle</item></item></item><item><item key="GSM692434"><item key="GENOTYPE">p53-/-</item><item key="COMPOUND">rapamycin</item></item></item><item><item key="GSM692434"><item key="GENOTYPE">p53-/-</item><item key="COMPOUND">rapamycin</item></item></item><item><item key="GSM692436"><item key="GENOTYPE">p53-/-, Tsc2-/-</item><item key="COMPOUND">vehicle</item></item></item><item><item key="GSM692436"><item key="GENOTYPE">p53-/-, Tsc2-/-</item><item key="COMPOUND">vehicle</item></item></item><item><item key="GSM692438"><item key="GENOTYPE">p53-/-, Tsc2-/-</item><item key="COMPOUND">rapamycin</item></item></item><item><item key="GSM692438"><item key="GENOTYPE">p53-/-, Tsc2-/-</item><item key="COMPOUND">rapamycin</item></item></item></item><item key="id">8270</item><item key="pop_total">0</item><item key="platform">7</item><item key="summary_wrapped">Mammalian target of rapamycin (mTOR) complex 1 (mTORC1) is a critical regulator of cell growth by integrating multiple signals...</item><item key="pubmed_id">21804531</item><item key="geo_gse_id">E-GEOD-27982</item><item key="owner_profile">/profile/8773/arrayexpressuploader</item><item key="factor_count">2</item><item key="sample_count">8</item><item key="tags"><item>cancer</item><item>cell</item><item>embryo</item><item>serum</item></item><item key="lastmodified">Dec.12, 2014</item><item key="is_default">False</item><item key="geo_id_plat">E-GEOD-27982_A-AFFY-23</item><item key="slug">transcription-profiling-by-array-of-mouse-immortal</item><item key="geo_gds_id"/><item key="name">Transcription profiling by array of mouse immortalized embryonic fibroblasts to identify genes regulated by mTORC1</item><item key="created">Nov.23, 2014</item><item key="summary">Mammalian target of rapamycin (mTOR) complex 1 (mTORC1) is a critical regulator of cell growth by integrating multiple signals (nutrients, growth factors, energy and stress) and is frequently deregulated in many types of cancer. We used a robust experimental paradigm involving the combination of two interventions, one genetic and one pharmacologic to identify genes regulated transcriptionally by mTORC1. In Tsc2+/+, but not Tsc2-/- immortalized mouse embryo fibroblasts (MEFs), serum deprivation downregulates mTORC1 activity. In Tsc2-/- cells, abnormal mTORC1 activity can be downregulated by treatment with rapamycin (sirolimus). By contrast, rapamycin has little effect on mTORC1 in Tsc2+/+ cells in which mTORC1 is already inhibited by low serum. Thus, under serum deprived conditions, mTORC1 activity is low in Tsc2+/+ cells (untreated or rapamycin treated), high in Tsc2-/- cells, but lowered by rapamycin; a pattern referred to as a &#8220;low/low/high/low&#8221; or &#8220;LLHL&#8221;, which allowed the identification of genes regulated by mTORC1 by performing the appropriate comparisons</item><item key="source">http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-27982</item><item key="sample_source">http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-27982/samples/</item></data></biogps>
