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<biogps><data><item key="owner">ArrayExpress Uploader</item><item key="pop_total">0</item><item key="species">mouse</item><item key="factors"><item><item key="GSM686818"><item key="CELL TYPE">Lineage negative, c-Kit and Sca1 (LSK) positive expressing bone marrow progenitors</item><item key="GENOTYPE">WT</item></item></item><item><item key="GSM686818"><item key="CELL TYPE">Lineage negative, c-Kit and Sca1 (LSK) positive expressing bone marrow progenitors</item><item key="GENOTYPE">WT</item></item></item><item><item key="GSM686820"><item key="CELL TYPE">Lineage negative, c-Kit and Sca1 (LSK) positive expressing bone marrow progenitors</item><item key="GENOTYPE">Tet2 KO</item></item></item><item><item key="GSM686820"><item key="CELL TYPE">Lineage negative, c-Kit and Sca1 (LSK) positive expressing bone marrow progenitors</item><item key="GENOTYPE">Tet2 KO</item></item></item><item><item key="GSM686822"><item key="CELL TYPE">Lineage negative, c-Kit positive and Sca1 (LSK) negative FCgammaReceptor Low CD34 positive expressing bone marrow progenitors CMP</item><item key="GENOTYPE">WT</item></item></item><item><item key="GSM686822"><item key="CELL TYPE">Lineage negative, c-Kit positive and Sca1 (LSK) negative FCgammaReceptor Low CD34 positive expressing bone marrow progenitors CMP</item><item key="GENOTYPE">WT</item></item></item><item><item key="GSM686824"><item key="CELL TYPE">Lineage negative, c-Kit positive and Sca1 (LSK) negative FCgammaReceptor Low CD34 positive expressing bone marrow progenitors CMP</item><item key="GENOTYPE">Tet2 KO</item></item></item><item><item key="GSM686824"><item key="CELL TYPE">Lineage negative, c-Kit positive and Sca1 (LSK) negative FCgammaReceptor Low CD34 positive expressing bone marrow progenitors CMP</item><item key="GENOTYPE">Tet2 KO</item></item></item><item><item key="GSM686826"><item key="CELL TYPE">Lineage negative, c-Kit positive and Sca1 (LSK) negative FCgammaReceptor High CD34 positive expressing bone marrow progenitors GMP</item><item key="GENOTYPE">WT</item></item></item><item><item key="GSM686826"><item key="CELL TYPE">Lineage negative, c-Kit positive and Sca1 (LSK) negative FCgammaReceptor High CD34 positive expressing bone marrow progenitors GMP</item><item key="GENOTYPE">WT</item></item></item><item><item key="GSM686828"><item key="CELL TYPE">Lineage negative, c-Kit positive and Sca1 (LSK) negative FCgammaReceptor High CD34 positive expressing bone marrow progenitors GMP</item><item key="GENOTYPE">Tet2 KO</item></item></item><item><item key="GSM686828"><item key="CELL TYPE">Lineage negative, c-Kit positive and Sca1 (LSK) negative FCgammaReceptor High CD34 positive expressing bone marrow progenitors GMP</item><item key="GENOTYPE">Tet2 KO</item></item></item><item><item key="GSM686830"><item key="CELL TYPE">Tet2 deficient CD150+ sorted LSKs</item><item key="GENOTYPE">Tet2 KO</item></item></item><item><item key="GSM686830"><item key="CELL TYPE">Tet2 deficient CD150+ sorted LSKs</item><item key="GENOTYPE">Tet2 KO</item></item></item></item><item key="id">6398</item><item key="ownerprofile_id">arrayexpress_sid</item><item key="platform">6</item><item key="summary_wrapped">Recurrent somatic mutations in TET2 and in other genes that regulate the epigenetic state have been identified in patients with myeloid...</item><item key="geo_gse_id">E-GEOD-27816</item><item key="owner_profile">/profile/8773/arrayexpressuploader</item><item key="factor_count">2</item><item key="sample_count">14</item><item key="tags"><item>cell</item><item>chromatin</item><item>genome</item><item>leukemia</item><item>stem cell</item></item><item key="lastmodified">Dec.12, 2014</item><item key="is_default">False</item><item key="geo_gds_id"/><item key="slug">tet2-loss-leads-to-increased-hematopoietic-stem-ce</item><item key="geo_id_plat">E-GEOD-27816_A-AFFY-45</item><item key="name">Tet2 loss leads to increased hematopoietic stem cell self-renewal and myeloid transformation</item><item key="created">Nov.11, 2014</item><item key="summary">Recurrent somatic mutations in TET2 and in other genes that regulate the epigenetic state have been identified in patients with myeloid malignancies and in other cancers.  However, the in vivo effects of Tet2 loss have not been delineated.   We report here that Tet2 loss leads to increased stem-cell self-renewal and to progressive stem cell expansion. Consistent with human mutational data, Tet2 loss leads to myeloproliferation in vivo, notable for splenomegaly and monocytic proliferation. In addition, haploinsufficiency for Tet2 confers increased self-renewal and myeloproliferation, suggesting that the monoallelic TET2 mutations found in most TET2-mutant leukemia patients contribute to myeloid transformation.  This work demonstrates that absent or reduced Tet2 function leads to enhanced stem cell function in vivo and to myeloid transformation. These studies show that a ubiquitin ligase-substrate pair can orchestrate the molecular program of HSC differentitiation Gene expression profiles from WT and Tet2-/- sorted LSK and myeloid progenitors (CMP and GMP) were compared using genome wide mRNA expression profiling by Affymetrix genechip arrays (Mouse 430 2.0) and key targets were validated by chromatin immunoprecipitation experiments.</item><item key="source">http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-27816</item><item key="sample_source">http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-27816/samples/</item></data></biogps>
