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<biogps><data><item key="owner">ArrayExpress Uploader</item><item key="pop_total">0</item><item key="id">8526</item><item key="factors"><item><item key="GSM648154"><item key="ORGANISM PART">bone marrow</item><item key="CELL TYPE">Purified Pro-B (B220-positive/CD43-high/IgM-negative) B-cells</item><item key="STRAIN OR LINE">129</item><item key="GENOTYPE">Wild-type</item></item></item><item><item key="GSM648154"><item key="ORGANISM PART">bone marrow</item><item key="CELL TYPE">Purified Pro-B (B220-positive/CD43-high/IgM-negative) B-cells</item><item key="STRAIN OR LINE">129</item><item key="GENOTYPE">Wild-type</item></item></item><item><item key="GSM648156"><item key="ORGANISM PART">bone marrow</item><item key="CELL TYPE">Purified Pro-B (B220-positive/CD43-high/IgM-negative) B-cells</item><item key="STRAIN OR LINE">B6</item><item key="GENOTYPE">Wild-type</item></item></item><item><item key="GSM648157"><item key="ORGANISM PART">bone marrow</item><item key="CELL TYPE">Purified Pre-B (B220-positive/CD43-low/IgM-negative) B-cells</item><item key="STRAIN OR LINE">129</item><item key="GENOTYPE">Wild-type</item></item></item><item><item key="GSM648157"><item key="ORGANISM PART">bone marrow</item><item key="CELL TYPE">Purified Pre-B (B220-positive/CD43-low/IgM-negative) B-cells</item><item key="STRAIN OR LINE">129</item><item key="GENOTYPE">Wild-type</item></item></item><item><item key="GSM648157"><item key="ORGANISM PART">bone marrow</item><item key="CELL TYPE">Purified Pre-B (B220-positive/CD43-low/IgM-negative) B-cells</item><item key="STRAIN OR LINE">129</item><item key="GENOTYPE">Wild-type</item></item></item><item><item key="GSM648160"><item key="ORGANISM PART">spleen</item><item key="CELL TYPE">Purified Transitional (B220-positive/Cd93-positive) B-cells</item><item key="STRAIN OR LINE">129</item><item key="GENOTYPE">Wild-type</item></item></item><item><item key="GSM648160"><item key="ORGANISM PART">spleen</item><item key="CELL TYPE">Purified Transitional (B220-positive/Cd93-positive) B-cells</item><item key="STRAIN OR LINE">129</item><item key="GENOTYPE">Wild-type</item></item></item><item><item key="GSM648160"><item key="ORGANISM PART">spleen</item><item key="CELL TYPE">Purified Transitional (B220-positive/Cd93-positive) B-cells</item><item key="STRAIN OR LINE">129</item><item key="GENOTYPE">Wild-type</item></item></item><item><item key="GSM648160"><item key="ORGANISM PART">spleen</item><item key="CELL TYPE">Purified Transitional (B220-positive/Cd93-positive) B-cells</item><item key="STRAIN OR LINE">129</item><item key="GENOTYPE">Wild-type</item></item></item><item><item key="GSM648164"><item key="ORGANISM PART">spleen</item><item key="CELL TYPE">Purified Follicular (Cd19-positive/Cd21-intermediate/Cd23-high) B-cells</item><item key="STRAIN OR LINE">129</item><item key="GENOTYPE">Wild-type</item></item></item><item><item key="GSM648164"><item key="ORGANISM PART">spleen</item><item key="CELL TYPE">Purified Follicular (Cd19-positive/Cd21-intermediate/Cd23-high) B-cells</item><item key="STRAIN OR LINE">129</item><item key="GENOTYPE">Wild-type</item></item></item><item><item key="GSM648164"><item key="ORGANISM PART">spleen</item><item key="CELL TYPE">Purified Follicular (Cd19-positive/Cd21-intermediate/Cd23-high) B-cells</item><item key="STRAIN OR LINE">129</item><item key="GENOTYPE">Wild-type</item></item></item><item><item key="GSM648167"><item key="ORGANISM PART">spleen</item><item key="CELL TYPE">Purified Marginal Zone (Cd19-positive/Cd21-high/Cd23-low) B-cells</item><item key="STRAIN OR LINE">129</item><item key="GENOTYPE">Wild-type</item></item></item><item><item key="GSM648167"><item key="ORGANISM PART">spleen</item><item key="CELL TYPE">Purified Marginal Zone (Cd19-positive/Cd21-high/Cd23-low) B-cells</item><item key="STRAIN OR LINE">129</item><item key="GENOTYPE">Wild-type</item></item></item><item><item key="GSM648167"><item key="ORGANISM PART">spleen</item><item key="CELL TYPE">Purified Marginal Zone (Cd19-positive/Cd21-high/Cd23-low) B-cells</item><item key="STRAIN OR LINE">129</item><item key="GENOTYPE">Wild-type</item></item></item><item><item key="GSM648170"><item key="ORGANISM PART">spleen</item><item key="CELL TYPE">Purified Germinal Centre (B220-positive/PNA-high) B-cells</item><item key="STRAIN OR LINE">B6</item><item key="GENOTYPE">Wild-type</item></item></item><item><item key="GSM648170"><item key="ORGANISM PART">spleen</item><item key="CELL TYPE">Purified Germinal Centre (B220-positive/PNA-high) B-cells</item><item key="STRAIN OR LINE">B6</item><item key="GENOTYPE">Wild-type</item></item></item><item><item key="GSM648170"><item key="ORGANISM PART">spleen</item><item key="CELL TYPE">Purified Germinal Centre (B220-positive/PNA-high) B-cells</item><item key="STRAIN OR LINE">B6</item><item key="GENOTYPE">Wild-type</item></item></item><item><item key="GSM648170"><item key="ORGANISM PART">spleen</item><item key="CELL TYPE">Purified Germinal Centre (B220-positive/PNA-high) B-cells</item><item key="STRAIN OR LINE">B6</item><item key="GENOTYPE">Wild-type</item></item></item><item><item key="GSM648170"><item key="ORGANISM PART">spleen</item><item key="CELL TYPE">Purified Germinal Centre (B220-positive/PNA-high) B-cells</item><item key="STRAIN OR LINE">B6</item><item key="GENOTYPE">Wild-type</item></item></item><item><item key="GSM648175"><item key="ORGANISM PART">spleen</item><item key="CELL TYPE">Purified Plasmablasts (B220-positive/Cd138-positive/Cd93-negative)</item><item key="STRAIN OR LINE">B6</item><item key="GENOTYPE">Wild-type</item></item></item><item><item key="GSM648175"><item key="ORGANISM PART">spleen</item><item key="CELL TYPE">Purified Plasmablasts (B220-positive/Cd138-positive/Cd93-negative)</item><item key="STRAIN OR LINE">B6</item><item key="GENOTYPE">Wild-type</item></item></item><item><item key="GSM648175"><item key="ORGANISM PART">spleen</item><item key="CELL TYPE">Purified Plasmablasts (B220-positive/Cd138-positive/Cd93-negative)</item><item key="STRAIN OR LINE">B6</item><item key="GENOTYPE">Wild-type</item></item></item><item><item key="GSM648175"><item key="ORGANISM PART">spleen</item><item key="CELL TYPE">Purified Plasmablasts (B220-positive/Cd138-positive/Cd93-negative)</item><item key="STRAIN OR LINE">B6</item><item key="GENOTYPE">Wild-type</item></item></item><item><item key="GSM648179"><item key="ORGANISM PART">bone marrow</item><item key="CELL TYPE">Purified Plasma cells (B220-low/Cd138-positive/Cd93-negative)</item><item key="STRAIN OR LINE">B6</item><item key="GENOTYPE">Wild-type</item></item></item><item><item key="GSM648179"><item key="ORGANISM PART">bone marrow</item><item key="CELL TYPE">Purified Plasma cells (B220-low/Cd138-positive/Cd93-negative)</item><item key="STRAIN OR LINE">B6</item><item key="GENOTYPE">Wild-type</item></item></item><item><item key="GSM648179"><item key="ORGANISM PART">bone marrow</item><item key="CELL TYPE">Purified Plasma cells (B220-low/Cd138-positive/Cd93-negative)</item><item key="STRAIN OR LINE">B6</item><item key="GENOTYPE">Wild-type</item></item></item><item><item key="GSM648182"><item key="ORGANISM PART">Tumor</item><item key="CELL TYPE">Lymphoid tumor</item><item key="STRAIN OR LINE">Bcl6 transgenic (Catoretti et al., Cancer Cell 2005</item><item key="GENOTYPE">Bcl6 knock-in</item></item></item><item><item key="GSM648182"><item key="ORGANISM PART">Tumor</item><item key="CELL TYPE">Lymphoid tumor</item><item key="STRAIN OR LINE">Bcl6 transgenic (Catoretti et al., Cancer Cell 2005</item><item key="GENOTYPE">Bcl6 knock-in</item></item></item><item><item key="GSM648182"><item key="ORGANISM PART">Tumor</item><item key="CELL TYPE">Lymphoid tumor</item><item key="STRAIN OR LINE">Bcl6 transgenic (Catoretti et al., Cancer Cell 2005</item><item key="GENOTYPE">Bcl6 knock-in</item></item></item><item><item key="GSM648182"><item key="ORGANISM PART">Tumor</item><item key="CELL TYPE">Lymphoid tumor</item><item key="STRAIN OR LINE">Bcl6 transgenic (Catoretti et al., Cancer Cell 2005</item><item key="GENOTYPE">Bcl6 knock-in</item></item></item><item><item key="GSM648186"><item key="ORGANISM PART">Tumor</item><item key="CELL TYPE">Lymphoid tumor</item><item key="STRAIN OR LINE">Myc/Bcl6 dual-transgenic (Pasqualucci et al., Nat. Genet. 2008;40:108-112)</item><item key="GENOTYPE">Bcl6/Myc dual-transgenic</item></item></item><item><item key="GSM648186"><item key="ORGANISM PART">Tumor</item><item key="CELL TYPE">Lymphoid tumor</item><item key="STRAIN OR LINE">Myc/Bcl6 dual-transgenic (Pasqualucci et al., Nat. Genet. 2008;40:108-112)</item><item key="GENOTYPE">Bcl6/Myc dual-transgenic</item></item></item><item><item key="GSM648186"><item key="ORGANISM PART">Tumor</item><item key="CELL TYPE">Lymphoid tumor</item><item key="STRAIN OR LINE">Myc/Bcl6 dual-transgenic (Pasqualucci et al., Nat. Genet. 2008;40:108-112)</item><item key="GENOTYPE">Bcl6/Myc dual-transgenic</item></item></item><item><item key="GSM648189"><item key="ORGANISM PART">Tumor</item><item key="CELL TYPE">Lymphoid tumor</item><item key="STRAIN OR LINE">Lig4/P53 KO (Frank et al., Mol. Cell 2000;5:993-1002)</item><item key="GENOTYPE">Lig4/p53 double knock-out</item></item></item><item><item key="GSM648189"><item key="ORGANISM PART">Tumor</item><item key="CELL TYPE">Lymphoid tumor</item><item key="STRAIN OR LINE">Lig4/P53 KO (Frank et al., Mol. Cell 2000;5:993-1002)</item><item key="GENOTYPE">Lig4/p53 double knock-out</item></item></item><item><item key="GSM648189"><item key="ORGANISM PART">Tumor</item><item key="CELL TYPE">Lymphoid tumor</item><item key="STRAIN OR LINE">Lig4/P53 KO (Frank et al., Mol. Cell 2000;5:993-1002)</item><item key="GENOTYPE">Lig4/p53 double knock-out</item></item></item><item><item key="GSM648189"><item key="ORGANISM PART">Tumor</item><item key="CELL TYPE">Lymphoid tumor</item><item key="STRAIN OR LINE">Lig4/P53 KO (Frank et al., Mol. Cell 2000;5:993-1002)</item><item key="GENOTYPE">Lig4/p53 double knock-out</item></item></item><item><item key="GSM648189"><item key="ORGANISM PART">Tumor</item><item key="CELL TYPE">Lymphoid tumor</item><item key="STRAIN OR LINE">Lig4/P53 KO (Frank et al., Mol. Cell 2000;5:993-1002)</item><item key="GENOTYPE">Lig4/p53 double knock-out</item></item></item><item><item key="GSM648189"><item key="ORGANISM PART">Tumor</item><item key="CELL TYPE">Lymphoid tumor</item><item key="STRAIN OR LINE">Lig4/P53 KO (Frank et al., Mol. Cell 2000;5:993-1002)</item><item key="GENOTYPE">Lig4/p53 double knock-out</item></item></item></item><item key="ownerprofile_id">arrayexpress_sid</item><item key="platform">8</item><item key="summary_wrapped">Heirarchical development of B-cells involves the induction and supression of large sets of genes that provide the basis for...</item><item key="pubmed_id">21282644</item><item key="geo_gse_id">E-GEOD-26408</item><item key="owner_profile">/profile/8773/arrayexpressuploader</item><item key="factor_count">4</item><item key="sample_count">41</item><item key="tags"><item>bone</item><item>bone marrow</item><item>cell</item><item>lymphoma</item><item>spleen</item></item><item key="lastmodified">Dec.12, 2014</item><item key="is_default">False</item><item key="geo_gds_id"/><item key="slug">signatures-of-murine-b-cell-development-implicate</item><item key="geo_id_plat">E-GEOD-26408_A-AFFY-36</item><item key="name">Signatures of murine B-cell development implicate Yy1 as a regulator of the germinal center-specific program</item><item key="created">Nov.24, 2014</item><item key="summary">Heirarchical development of B-cells involves the induction and supression of large sets of genes that provide the basis for differentiation and, ultimately, antibody production. We used microarrays to define comprehensive differentiation state-specific transcriptional signatures in order to gain insight into B-cell biology. In addition, we compared profiles of normal B-cells to those of murine lymphoma models that are putatively aligned with different states. B-cells of different differentiation states were purified from the bone marrow and spleen of mice use flow cytometry with antibodies specific for pre-defined markers of each differentiation state. Purified populations were then profiled using Affymetrix Mouse 430A2 gene expression microarrays. Tumors from Bcl6-trangenic mice, Bcl6/Myc dual-transgenic mice and p53/Lig4 double knock-out mice were also profiled using these microarrays in order to assess the similarities/differences between normal and malignant B-cells.</item><item key="source">http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-26408</item><item key="species">mouse</item><item key="sample_source">http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-26408/samples/</item></data></biogps>
