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<biogps><data><item key="owner">ArrayExpress Uploader</item><item key="pop_total">0</item><item key="id">3882</item><item key="factors"><item><item key="GSM629894"><item key="DISEASE STATUS">MALT lymphoma</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629894"><item key="DISEASE STATUS">MALT lymphoma</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629894"><item key="DISEASE STATUS">MALT lymphoma</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629894"><item key="DISEASE STATUS">MALT lymphoma</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629894"><item key="DISEASE STATUS">MALT lymphoma</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629894"><item key="DISEASE STATUS">MALT lymphoma</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629894"><item key="DISEASE STATUS">MALT lymphoma</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629894"><item key="DISEASE STATUS">MALT lymphoma</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629894"><item key="DISEASE STATUS">MALT lymphoma</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629894"><item key="DISEASE STATUS">MALT lymphoma</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629894"><item key="DISEASE STATUS">MALT lymphoma</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629894"><item key="DISEASE STATUS">MALT lymphoma</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629894"><item key="DISEASE STATUS">MALT lymphoma</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629894"><item key="DISEASE STATUS">MALT lymphoma</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629894"><item key="DISEASE STATUS">MALT lymphoma</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629894"><item key="DISEASE STATUS">MALT lymphoma</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629894"><item key="DISEASE STATUS">MALT lymphoma</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629894"><item key="DISEASE STATUS">MALT lymphoma</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629894"><item key="DISEASE STATUS">MALT lymphoma</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629894"><item key="DISEASE STATUS">MALT lymphoma</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629894"><item key="DISEASE STATUS">MALT lymphoma</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629894"><item key="DISEASE STATUS">MALT lymphoma</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629894"><item key="DISEASE STATUS">MALT lymphoma</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629894"><item key="DISEASE STATUS">MALT lymphoma</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629894"><item key="DISEASE STATUS">MALT lymphoma</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629894"><item key="DISEASE STATUS">MALT lymphoma</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629894"><item key="DISEASE STATUS">MALT lymphoma</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629894"><item key="DISEASE STATUS">MALT lymphoma</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629894"><item key="DISEASE STATUS">MALT lymphoma</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629894"><item key="DISEASE STATUS">MALT lymphoma</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629894"><item key="DISEASE STATUS">MALT lymphoma</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629925"><item key="DISEASE STATUS">DLBCL</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629925"><item key="DISEASE STATUS">DLBCL</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629925"><item key="DISEASE STATUS">DLBCL</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629925"><item key="DISEASE STATUS">DLBCL</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629925"><item key="DISEASE STATUS">DLBCL</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629925"><item key="DISEASE STATUS">DLBCL</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629925"><item key="DISEASE STATUS">DLBCL</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629925"><item key="DISEASE STATUS">DLBCL</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629925"><item key="DISEASE STATUS">DLBCL</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629925"><item key="DISEASE STATUS">DLBCL</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629925"><item key="DISEASE STATUS">DLBCL</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629925"><item key="DISEASE STATUS">DLBCL</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629925"><item key="DISEASE STATUS">DLBCL</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629925"><item key="DISEASE STATUS">DLBCL</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629925"><item key="DISEASE STATUS">DLBCL</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629925"><item key="DISEASE STATUS">DLBCL</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629925"><item key="DISEASE STATUS">DLBCL</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629925"><item key="DISEASE STATUS">DLBCL</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629925"><item key="DISEASE STATUS">DLBCL</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629925"><item key="DISEASE STATUS">DLBCL</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629925"><item key="DISEASE STATUS">DLBCL</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629925"><item key="DISEASE STATUS">DLBCL</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629925"><item key="DISEASE STATUS">DLBCL</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629925"><item key="DISEASE STATUS">DLBCL</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629925"><item key="DISEASE STATUS">DLBCL</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629925"><item key="DISEASE STATUS">DLBCL</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM62995"><item key="DISEASE STATUS">FCL</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM62995"><item key="DISEASE STATUS">FCL</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM62995"><item key="DISEASE STATUS">FCL</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM62995"><item key="DISEASE STATUS">FCL</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM62995"><item key="DISEASE STATUS">FCL</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM62995"><item key="DISEASE STATUS">FCL</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM62995"><item key="DISEASE STATUS">FCL</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM62995"><item key="DISEASE STATUS">FCL</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM62995"><item key="DISEASE STATUS">FCL</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM62995"><item key="DISEASE STATUS">FCL</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM62995"><item key="DISEASE STATUS">FCL</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM62995"><item key="DISEASE STATUS">FCL</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM62995"><item key="DISEASE STATUS">FCL</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM62995"><item key="DISEASE STATUS">FCL</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM62995"><item key="DISEASE STATUS">FCL</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629966"><item key="DISEASE STATUS">SMZL</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629966"><item key="DISEASE STATUS">SMZL</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629966"><item key="DISEASE STATUS">SMZL</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629966"><item key="DISEASE STATUS">SMZL</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629966"><item key="DISEASE STATUS">SMZL</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629966"><item key="DISEASE STATUS">SMZL</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629966"><item key="DISEASE STATUS">SMZL</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629966"><item key="DISEASE STATUS">SMZL</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629966"><item key="DISEASE STATUS">SMZL</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629966"><item key="DISEASE STATUS">SMZL</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629966"><item key="DISEASE STATUS">SMZL</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629966"><item key="DISEASE STATUS">SMZL</item><item key="CELL TYPE">lymphoma</item><item key="ORGANISM PART">frozen biopsy</item></item></item><item><item key="GSM629978"><item key="DISEASE STATUS">healthy control</item><item key="CELL TYPE">centroblats</item><item key="ORGANISM PART">tonsil</item></item></item><item><item key="GSM629978"><item key="DISEASE STATUS">healthy control</item><item key="CELL TYPE">centroblats</item><item key="ORGANISM PART">tonsil</item></item></item><item><item key="GSM629980"><item key="DISEASE STATUS">healthy control</item><item key="CELL TYPE">CD19+</item><item key="ORGANISM PART">blood</item></item></item><item><item key="GSM629980"><item key="DISEASE STATUS">healthy control</item><item key="CELL TYPE">CD19+</item><item key="ORGANISM PART">blood</item></item></item><item><item key="GSM629982"><item key="DISEASE STATUS">healthy control</item><item key="CELL TYPE">CD19+, &#945;IgM,&#945;CD40,IL4, 24h</item><item key="ORGANISM PART">blood</item></item></item><item><item key="GSM629982"><item key="DISEASE STATUS">healthy control</item><item key="CELL TYPE">CD19+, &#945;IgM,&#945;CD40,IL4, 24h</item><item key="ORGANISM PART">blood</item></item></item><item><item key="GSM629984"><item key="DISEASE STATUS">healthy control</item><item key="CELL TYPE">IgM+IgD+CD27+</item><item key="ORGANISM PART">blood</item></item></item><item><item key="GSM629984"><item key="DISEASE STATUS">healthy control</item><item key="CELL TYPE">IgM+IgD+CD27+</item><item key="ORGANISM PART">blood</item></item></item><item><item key="GSM629986"><item key="DISEASE STATUS">healthy control</item><item key="CELL TYPE">memory B cells</item><item key="ORGANISM PART">tonsil</item></item></item><item><item key="GSM629986"><item key="DISEASE STATUS">healthy control</item><item key="CELL TYPE">memory B cells</item><item key="ORGANISM PART">tonsil</item></item></item><item><item key="GSM629988"><item key="DISEASE STATUS">healthy control</item><item key="CELL TYPE">naive B cells</item><item key="ORGANISM PART">tonsil</item></item></item><item><item key="GSM629988"><item key="DISEASE STATUS">healthy control</item><item key="CELL TYPE">naive B cells</item><item key="ORGANISM PART">tonsil</item></item></item><item><item key="GSM629990"><item key="DISEASE STATUS">healthy control</item><item key="CELL TYPE">T cells</item><item key="ORGANISM PART">tonsil</item></item></item></item><item key="ownerprofile_id">arrayexpress_sid</item><item key="platform">4</item><item key="summary_wrapped">Attempts at modeling chromosomal translocations involving MALT1 gene, hallmarks of human mucosa-associated lymphoid tissue (MALT)...</item><item key="pubmed_id">22689981</item><item key="geo_gse_id">E-GEOD-25638</item><item key="owner_profile">/profile/8773/arrayexpressuploader</item><item key="factor_count">3</item><item key="sample_count">97</item><item key="tags"><item>cell</item><item>disease</item><item>lymphocyte</item><item>lymphoid tissue</item><item>lymphoma</item><item>malt lymphoma</item><item>mucosa</item><item>mucosa-associated lymphoid tissue</item></item><item key="lastmodified">Dec.12, 2014</item><item key="is_default">False</item><item key="geo_id_plat">E-GEOD-25638_A-AFFY-44</item><item key="slug">a-mouse-model-of-deregulation-of-the-malt1-oncogen</item><item key="geo_gds_id"/><item key="name">A mouse model of deregulation of the malt1 oncogene recapitulates the pathogenesis of human malt lymphoma [MALT dataset]</item><item key="created">Sep.15, 2014</item><item key="summary">Attempts at modeling chromosomal translocations involving MALT1 gene, hallmarks of human mucosa-associated lymphoid tissue (MALT) lymphoma, have failed to reproduce the disease in mice. Here we describe a transgenic model in which MALT1 expression was targeted to mouse hematopoietic stem/progenitor cells. In Sca1-MALT1 mice, MALT1 deregulation activated the NF-kappaB pathway in Sca1+ cells, promoting selective B-cell differentiation and mature lymphocyte accumulation in extranodal tissues, progressively leading to the development of clonal B-cell lymphomas. These tumors recapitulated the histopathological features of human MALT lymphomas, presenting typical lymphoepithelial lesions and plasmacytic differentiation. Transcriptional profiling of Sca1-MALT1 murine lymphomas revealed overlapping molecular signatures with human MALT lymphomas, including MALT1-mediated NF-kappaB activation, pro-inflammatory signaling and XBP1-induced plasmacytic differentiation. Moreover, murine Malt1 showed proteolytic activity by cleaving Bcl10 in Sca1-MALT1 lymphomas. Our novel technological approach has allowed modeling human MALT lymphoma in mice, which represent unique tools study MALT lymphoma biology and evaluate anti-MALT1 therapies.  Keywords: lymphoma profiling, MALT lymphoma 97 samples were analized of which 13 were normal B-cell purified subpopulations and 84 lymphoma samples (31 MALT lymphomas, 26 DLBCL, 15 FCL and 12 SMZL)</item><item key="source">http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-25638</item><item key="species">human</item><item key="sample_source">http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-25638/samples/</item></data></biogps>
