{"platform": 6, "owner": "ArrayExpress Uploader", "pop_total": 0, "species": "mouse", "factors": [{"GSM598997": {"DEVELOPMENTAL STAGE": "E12.5", "CELL TYPE": "microdissected metanephric mesenchyme"}}, {"GSM598997": {"DEVELOPMENTAL STAGE": "E12.5", "CELL TYPE": "microdissected metanephric mesenchyme"}}, {"GSM598999": {"DEVELOPMENTAL STAGE": "E12.5", "CELL TYPE": "microdissected ureteric bud stalks"}}, {"GSM598999": {"DEVELOPMENTAL STAGE": "E12.5", "CELL TYPE": "microdissected ureteric bud stalks"}}, {"GSM59900": {"DEVELOPMENTAL STAGE": "E12.5", "CELL TYPE": "microdissected ureteric bud tips"}}, {"GSM59900": {"DEVELOPMENTAL STAGE": "E12.5", "CELL TYPE": "microdissected ureteric bud tips"}}, {"GSM599003": {"DEVELOPMENTAL STAGE": "n/a", "CELL TYPE": "mouse inner medullary collecting duct cell"}}], "id": 6223, "ownerprofile_id": "arrayexpress_sid", "source": "http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-24295", "summary_wrapped": "We aimed to define epithelial-specific genes in the kidney. In the developing mouse kidney at E12.5 epithelial cells are restricted to...", "owner_profile": "/profile/8773/arrayexpressuploader", "factor_count": 2, "sample_count": 7, "tags": ["cell", "epithelial cell", "genome", "kidney", "line"], "lastmodified": "Dec.12, 2014", "is_default": false, "geo_gds_id": "", "slug": "gene-expression-in-epithelial-and-non-epithelial-c", "geo_id_plat": "E-GEOD-24295_A-AFFY-45", "name": "Gene expression in epithelial and non-epithelial cells of renal origin", "created": "Nov.11, 2014", "summary": "We aimed to define epithelial-specific genes in the kidney. In the developing mouse kidney at E12.5 epithelial cells are restricted to the ureteric bud, while mesenchymal cells surrounding the ureteric bud are non-epithelial. The mouse renal epithelial cell line mIMCD-3 was used to represent kidney epithelia in vitro. Gene expression was analyzed using Affymetrix microarrays in ureteric bud stalks, ureteric bud tips, and mIMCD-3 cells and compared to metanephric mesenchyme. Affymetrix Mouse Genome 430 2.0 microarrays from mouse E12.5 ureteric bud tips, ureteric bus stalks, and metanephric mesenchymes had previously been published (GEO deposition: GDS1583) (Schmidt-Ott, K. M., Yang, J., Chen, X., Wang, H., Paragas, N., Mori, K., Li, J. Y., Lu, B., Costantini, F., Schiffer, M. et al. (2005). Novel regulators of kidney development from the tips of the ureteric bud. J Am Soc Nephrol 16, 1993-2002.). We added a new microarray analysis from a subclone of mIMCD-3 cells and recalculated expression values in the complete dataset by robust multichip analysis.", "geo_gse_id": "E-GEOD-24295", "sample_source": "http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-24295/samples/"}