ArrayExpress Uploader01319RDERpos344.225124RDERpos258.130236RDERneg361.073023.4RDERpos257.654123pCRERnegNA52.808024RDERpos246.004123.5pCRERneg345.963336RDERpos345.232036RDERpos354.549025RDERpos242.565135.5pCRERneg348.433038pCRERneg346.782124RDERpos234.075036RDERpos247.8991310RDERneg332.578112pCRERnegNA49.607036.5RDERneg238.5930313RDERpos252.485037pCRERpos340.337222.3pCRERpos347.392037RDERneg355.658136RDERneg366.710135.5pCRERpos250.056124RDERneg333.5392311.8RDERpos344.402136pCRERpos352.7451310pCRERneg340.687323.5RDERneg362.341122.5RDERpos259.4721310RDERneg343.893235.5pCRERneg249.246037.5pCRERneg350.300123.5RDERposNA26.0861314RDERneg366.8201311.5RDERpos345.1091311RDERpos255.934138RDERneg260.860124RDERpos341.273135.3RDERneg365.3142317.5RDERpos360.099036pCRERneg351.132136RDERpos145.363024RDERneg359.2310315RDERpos251.461036.5RDERpos346.943136pCRERneg350.064137.5RDERpos353.988036RDERneg265.0541311RDERneg349.010036RDERneg340.337125pCRERneg343.028138RDERpos357.536125pCRERneg334.059037RDERpos247.118137pCRERpos350.7711310pCRERpos343.775338pCRERpos247.099023.5RDERpos236.739124pCRERneg341.914123RDERpos232.197024.5RDERnegNA46.209036arrayexpress_sid3This is Phase II Trial of 4courses of 5-fluorouracil, doxorubicin and cyclophosphamide follwed by 4 additional courses of weekly...21191116E-GEOD-23988/profile/8773/arrayexpressuploader761breastbreast cancercancerDec.12, 2014Falseexpression-data-from-breast-cancer-fna-biopsies-2E-GEOD-23988_A-AFFY-33Expression data from breast cancer FNA biopsies from patients (US samples)Jun.19, 2014This is Phase II Trial of 4courses of 5-fluorouracil, doxorubicin and cyclophosphamide follwed by 4 additional courses of weekly docetaxel and capecitabine administered as Preoperative Therapy for Patients with Locally Advanced Breast Cancer, Stages II and III by US oncology (PROTOCOL 02-103) We performed gene set analysis (GSA) using functionally annotated gene sets corresponding to almost all known biological processes in ER-positive/HER2negative and ER-negative/HER2-negative breast cancer, respectively. Pre-treatment FNA from primary tumors were obtained and RNA extracted and hybridized to afymetrix microarrays according to manufacturer protocol.http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-23988humanhttp://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-23988/samples/