ArrayExpress Uploader0humanNMC cell line TC-797ethanol vehicle controlNMC cell line TC-797ethanol vehicle controlNMC cell line TC-797ethanol vehicle controlNMC cell line TC-797trichostatin (TSA)NMC cell line TC-797trichostatin (TSA)NMC cell line TC-797trichostatin (TSA)NMC cell line TC-797scrambled control siRNANMC cell line TC-797scrambled control siRNANMC cell line TC-797NUT siRNANMC cell line TC-797NUT siRNANMC cell line PER-403ethanol vehicle controlNMC cell line PER-403ethanol vehicle controlNMC cell line PER-403ethanol vehicle controlNMC cell line PER-403trichostatin (TSA)NMC cell line PER-403trichostatin (TSA)NMC cell line PER-403trichostatin (TSA)NMC cell line PER-403scrambled control siRNANMC cell line PER-403scrambled control siRNANMC cell line PER-403NUT siRNANMC cell line PER-403NUT siRNA3460arrayexpress_sid4Knockdown of the oncogene, BRD4-NUT, in a rare cancer, termed NUTmidline carcinoma (NMC), results in morphologic features consistent with...E-GEOD-18668/profile/8773/arrayexpressuploader220cancercarcinomacellsquamousDec.12, 2014Falsedifferentiation-of-nut-midline-carcinoma-by-epigenE-GEOD-18668_A-AFFY-44Differentiation of NUT midline carcinoma by epigenomic reprogrammingSep.15, 2014Knockdown of the oncogene, BRD4-NUT, in a rare cancer, termed NUTmidline carcinoma (NMC), results in morphologic features consistent with squamous differentiation. Treatment with the HDAC-inhibitor, TSA, appears to cause the same phenotype. Here, we use gene expression profiling to compare the changes in gene expression following BRD4-NUT knockdown and TSA treatment. RNA was extracted from two BRD4-NUT-expressing NMC cell lines, PER-403 and TC-797, 24h following siRNA knockdown versus control in duplicate. RNA was extracted from two BRD4-NUT-expressing NMC cell lines, PER-403 and TC-797, 24h following treatment with TSA versus etoh control in triplicatehttp://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-18668http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-18668/samples/