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<biogps><data><item key="owner">ArrayExpress Uploader</item><item key="pop_total">0</item><item key="id">3302</item><item key="factors"><item><item key="GSM410843"><item key="disease state">Langerhans cell histiocytosis</item><item key="cell type">CD207 positive</item><item key="organism part">Langerhans cell histiocytosis lesion</item></item></item><item><item key="GSM410843"><item key="disease state">Langerhans cell histiocytosis</item><item key="cell type">CD207 positive</item><item key="organism part">Langerhans cell histiocytosis lesion</item></item></item><item><item key="GSM410845"><item key="disease state">Langerhans cell histiocytosis</item><item key="cell type">CD207 positive</item><item key="organism part">  </item></item></item><item><item key="GSM410843"><item key="disease state">Langerhans cell histiocytosis</item><item key="cell type">CD207 positive</item><item key="organism part">Langerhans cell histiocytosis lesion</item></item></item><item><item key="GSM410843"><item key="disease state">Langerhans cell histiocytosis</item><item key="cell type">CD207 positive</item><item key="organism part">Langerhans cell histiocytosis lesion</item></item></item><item><item key="GSM410843"><item key="disease state">Langerhans cell histiocytosis</item><item key="cell type">CD207 positive</item><item key="organism part">Langerhans cell histiocytosis lesion</item></item></item><item><item key="GSM410843"><item key="disease state">Langerhans cell histiocytosis</item><item key="cell type">CD207 positive</item><item key="organism part">Langerhans cell histiocytosis lesion</item></item></item><item><item key="GSM410843"><item key="disease state">Langerhans cell histiocytosis</item><item key="cell type">CD207 positive</item><item key="organism part">Langerhans cell histiocytosis lesion</item></item></item><item><item key="GSM410843"><item key="disease state">Langerhans cell histiocytosis</item><item key="cell type">CD207 positive</item><item key="organism part">Langerhans cell histiocytosis lesion</item></item></item><item><item key="GSM410843"><item key="disease state">Langerhans cell histiocytosis</item><item key="cell type">CD207 positive</item><item key="organism part">Langerhans cell histiocytosis lesion</item></item></item><item><item key="GSM410843"><item key="disease state">Langerhans cell histiocytosis</item><item key="cell type">CD207 positive</item><item key="organism part">Langerhans cell histiocytosis lesion</item></item></item><item><item key="GSM410843"><item key="disease state">Langerhans cell histiocytosis</item><item key="cell type">CD207 positive</item><item key="organism part">Langerhans cell histiocytosis lesion</item></item></item><item><item key="GSM410843"><item key="disease state">Langerhans cell histiocytosis</item><item key="cell type">CD207 positive</item><item key="organism part">Langerhans cell histiocytosis lesion</item></item></item><item><item key="GSM410938"><item key="disease state">Langerhans cell histiocytosis</item><item key="cell type">CD3 positive</item><item key="organism part">Langerhans cell histiocytosis lesion</item></item></item><item><item key="GSM410938"><item key="disease state">Langerhans cell histiocytosis</item><item key="cell type">CD3 positive</item><item key="organism part">Langerhans cell histiocytosis lesion</item></item></item><item><item key="GSM410938"><item key="disease state">Langerhans cell histiocytosis</item><item key="cell type">CD3 positive</item><item key="organism part">Langerhans cell histiocytosis lesion</item></item></item><item><item key="GSM410938"><item key="disease state">Langerhans cell histiocytosis</item><item key="cell type">CD3 positive</item><item key="organism part">Langerhans cell histiocytosis lesion</item></item></item><item><item key="GSM410938"><item key="disease state">Langerhans cell histiocytosis</item><item key="cell type">CD3 positive</item><item key="organism part">Langerhans cell histiocytosis lesion</item></item></item><item><item key="GSM410938"><item key="disease state">Langerhans cell histiocytosis</item><item key="cell type">CD3 positive</item><item key="organism part">Langerhans cell histiocytosis lesion</item></item></item><item><item key="GSM410938"><item key="disease state">Langerhans cell histiocytosis</item><item key="cell type">CD3 positive</item><item key="organism part">Langerhans cell histiocytosis lesion</item></item></item><item><item key="GSM410938"><item key="disease state">Langerhans cell histiocytosis</item><item key="cell type">CD3 positive</item><item key="organism part">Langerhans cell histiocytosis lesion</item></item></item><item><item key="GSM410938"><item key="disease state">Langerhans cell histiocytosis</item><item key="cell type">CD3 positive</item><item key="organism part">Langerhans cell histiocytosis lesion</item></item></item><item><item key="GSM410938"><item key="disease state">Langerhans cell histiocytosis</item><item key="cell type">CD3 positive</item><item key="organism part">Langerhans cell histiocytosis lesion</item></item></item><item><item key="GSM410938"><item key="disease state">Langerhans cell histiocytosis</item><item key="cell type">CD3 positive</item><item key="organism part">Langerhans cell histiocytosis lesion</item></item></item><item><item key="GSM410938"><item key="disease state">Langerhans cell histiocytosis</item><item key="cell type">CD3 positive</item><item key="organism part">Langerhans cell histiocytosis lesion</item></item></item><item><item key="GSM41114"><item key="disease state">Langerhans cell histiocytosis</item><item key="cell type">CD3 positive</item><item key="organism part">peripheral blood</item></item></item><item><item key="GSM41114"><item key="disease state">Langerhans cell histiocytosis</item><item key="cell type">CD3 positive</item><item key="organism part">peripheral blood</item></item></item><item><item key="GSM41114"><item key="disease state">Langerhans cell histiocytosis</item><item key="cell type">CD3 positive</item><item key="organism part">peripheral blood</item></item></item><item><item key="GSM41114"><item key="disease state">Langerhans cell histiocytosis</item><item key="cell type">CD3 positive</item><item key="organism part">peripheral blood</item></item></item><item><item key="GSM41114"><item key="disease state">Langerhans cell histiocytosis</item><item key="cell type">CD3 positive</item><item key="organism part">peripheral blood</item></item></item><item><item key="GSM41114"><item key="disease state">Langerhans cell histiocytosis</item><item key="cell type">CD3 positive</item><item key="organism part">peripheral blood</item></item></item><item><item key="GSM41114"><item key="disease state">Langerhans cell histiocytosis</item><item key="cell type">CD3 positive</item><item key="organism part">peripheral blood</item></item></item><item><item key="GSM411150"><item key="disease state">normal</item><item key="cell type">CD207 positive</item><item key="organism part">skin</item></item></item><item><item key="GSM411150"><item key="disease state">normal</item><item key="cell type">CD207 positive</item><item key="organism part">skin</item></item></item><item><item key="GSM411150"><item key="disease state">normal</item><item key="cell type">CD207 positive</item><item key="organism part">skin</item></item></item><item><item key="GSM411150"><item key="disease state">normal</item><item key="cell type">CD207 positive</item><item key="organism part">skin</item></item></item><item><item key="GSM411150"><item key="disease state">normal</item><item key="cell type">CD207 positive</item><item key="organism part">skin</item></item></item><item><item key="GSM411150"><item key="disease state">normal</item><item key="cell type">CD207 positive</item><item key="organism part">skin</item></item></item><item><item key="GSM411150"><item key="disease state">normal</item><item key="cell type">CD207 positive</item><item key="organism part">skin</item></item></item><item><item key="GSM411150"><item key="disease state">normal</item><item key="cell type">CD207 positive</item><item key="organism part">skin</item></item></item><item><item key="GSM411150"><item key="disease state">normal</item><item key="cell type">CD207 positive</item><item key="organism part">skin</item></item></item><item><item key="GSM411150"><item key="disease state">normal</item><item key="cell type">CD207 positive</item><item key="organism part">skin</item></item></item><item><item key="GSM411150"><item key="disease state">normal</item><item key="cell type">CD207 positive</item><item key="organism part">skin</item></item></item><item><item key="GSM411150"><item key="disease state">normal</item><item key="cell type">CD207 positive</item><item key="organism part">skin</item></item></item><item><item key="GSM411663"><item key="disease state">normal</item><item key="cell type">CD3 positive</item><item key="organism part">tonsil</item></item></item><item><item key="GSM411663"><item key="disease state">normal</item><item key="cell type">CD3 positive</item><item key="organism part">tonsil</item></item></item><item><item key="GSM411663"><item key="disease state">normal</item><item key="cell type">CD3 positive</item><item key="organism part">tonsil</item></item></item><item><item key="GSM411663"><item key="disease state">normal</item><item key="cell type">CD3 positive</item><item key="organism part">tonsil</item></item></item></item><item key="ownerprofile_id">arrayexpress_sid</item><item key="platform">4</item><item key="summary_wrapped">Langerhans-cell histiocytosis (LCH) is characterized by heterogeneous lesions containing CD207+ Langerhans cells (LCs) and lymphocytes....</item><item key="pubmed_id">20220088</item><item key="geo_gse_id">E-GEOD-16395</item><item key="owner_profile">/profile/8773/arrayexpressuploader</item><item key="factor_count">3</item><item key="sample_count">48</item><item key="tags"><item>bone</item><item>cell</item><item>cell phenotype</item><item>dendritic</item><item>histiocytosis</item><item>langerhans-cell histiocytosis</item><item>peripheral</item><item>skin</item><item>tonsil</item></item><item key="lastmodified">Dec.12, 2014</item><item key="is_default">False</item><item key="geo_gds_id"/><item key="slug">transcrition-profiling-of-langerhans-cell-histiocy</item><item key="geo_id_plat">E-GEOD-16395_A-AFFY-44</item><item key="name">Transcrition profiling of  Langerhans Cell Histiocytosis to determine cell specific gene expression</item><item key="created">Sep.12, 2014</item><item key="summary">Langerhans-cell histiocytosis (LCH) is characterized by heterogeneous lesions containing CD207+ Langerhans cells (LCs) and lymphocytes.   In this study, we isolated CD207+ cells and CD3+ T cells from LCH lesions to determine cell-specific gene expression.  Compared to control epidermal CD207+ cells, the LCH CD207+ cells yielded 2113 differentially-expressed genes (FDR&lt;0.01).  Surprisingly, expression of many genes previously associated with LCH, including cell-cycle regulators, pro-inflammatory cytokines and chemokines were not significantly different from control LCs in our study.  However, several novel genes whose products activate and recruit T cells to sites of inflammation, including SPP1 (osteopontin), were highly over-expressed in LCH CD207+ cells.  Furthermore, several genes associated with immature myeloid dendritic cells were over-expressed in LCH CD207+ cells.  Compared to the peripheral CD3+ cells from LCH patients, the LCH lesion CD3+ cells yielded only 162 differentially-regulated genes (FDR&lt;0.01), and the expression profile of the LCH lesion CD3+ cells was consistent with an activated regulatory T cell phenotype with increased expression of FOXP3, CTLA4 as well as SPP1.  Based on these results, we propose a new model of LCH pathogenesis in which lesions do not arise from epidermal Langerhans cells, but from accumulation of bone-marrow derived immature myeloid dendritic cells that recruit activated lymphocytes. Cell-specific gene expression from LCH biopsy specimens was evaluated by comparing hybridization signal from amplified cDNA on Affymetrix gene chips (U133A Plus 2.0) (Table1).  Three sets of comparisons were performed: 1) Thirteen LCH CD207+ samples were compared to 12 control skin LCH CD207+ samples. 2) Seven LCH lesion CD3+ samples were compared to 7 peripheral blood CD3+ samples from the same patients.  3) Twelve LCH lesion CD3+ samples were compared to 4 pooled control tonsil CD3+ samples (5 individual tonsil CD3+ samples/pool).</item><item key="source">http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-16395</item><item key="species">human</item><item key="sample_source">http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-16395/samples/</item></data></biogps>
