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<biogps><data><item key="platform">6</item><item key="owner">ArrayExpress Uploader</item><item key="pop_total">0</item><item key="species">mouse</item><item key="factors"><item><item key="GSM385564"><item key="ISOTYPE SWITCHING">Low frequencies of switching in vitro</item><item key="HYBRIDOMA SUBCLONE">36-65 hybridoma subclone L25</item></item></item><item><item key="GSM385565"><item key="ISOTYPE SWITCHING">Low frequencies of switching in vitro</item><item key="HYBRIDOMA SUBCLONE">36-65 hybridoma subclone L27</item></item></item><item><item key="GSM385566"><item key="ISOTYPE SWITCHING">Spontaneous high frequencies of switching in vitro</item><item key="HYBRIDOMA SUBCLONE">36-65 hybridoma subclone H23</item></item></item><item><item key="GSM385567"><item key="ISOTYPE SWITCHING">Spontaneous high frequencies of switching in vitro</item><item key="HYBRIDOMA SUBCLONE">36-65 hybridoma subclone H27</item></item></item></item><item key="id">5655</item><item key="ownerprofile_id">arrayexpress_sid</item><item key="source">http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-15357</item><item key="summary_wrapped">This is a comparative microarray analysis of  36-65 hybridomas switching at normal low frequencies in vitro vs. selected variants...</item><item key="owner_profile">/profile/8773/arrayexpressuploader</item><item key="factor_count">2</item><item key="sample_count">4</item><item key="tags"><item>chromatin</item><item>class</item></item><item key="lastmodified">Dec.12, 2014</item><item key="is_default">False</item><item key="geo_id_plat">E-GEOD-15357_A-AFFY-45</item><item key="slug">molecular-characterization-of-hybridoma-subclones</item><item key="geo_gds_id"/><item key="name">Molecular characterization of hybridoma subclones spontaneously switching at high frequencies in vitro</item><item key="created">Nov.11, 2014</item><item key="summary">This is a comparative microarray analysis of  36-65 hybridomas switching at normal low frequencies in vitro vs. selected variants spontaneously switching at 100 fold higher frequencies in vitro. This analysis reveals differential gene expression of 2091 unique probe sets, 1637 of them corresponded to known genes (647 of which were up-regulated and 990 down-regulated in the variants spontaneously switching at higher frequencies), including genes known to be involved in regular class switching (such as Cd40, Lig4, H2afx,Ung, Xrcc4, Tcfe2a, Id2, Apex1, Bcl6 and Prdm1) as well as genes involved in processes known to be necessary for regular class switch recombination (CSR), such as transcription, response to DNA damage and DNA repair, DNA binding, chromatin modifications, etc. Two subclones of each hybridoma switching at low (L) and high (H) frequencies were analyzed.</item><item key="geo_gse_id">E-GEOD-15357</item><item key="sample_source">http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-15357/samples/</item></data></biogps>
