ArrayExpress Uploaderarrayexpress_sidmouse562106The innate immune system is a two-edged sword; it is absolutely required for host defense against infection, but if left uncontrolled can...19270711E-GEOD-14769/profile/8773/arrayexpressuploader024bonebone marrowimmune systemleftDec.12, 2014FalseE-GEOD-14769_A-AFFY-45transcription-profiling-of-mouse-bone-marrow-der-2Transcription profiling of mouse bone marrow-derived macrophages simulated with LPS, time seriesNov.10, 2014The innate immune system is a two-edged sword; it is absolutely required for host defense against infection, but if left uncontrolled can trigger a plethora of inflammatory diseases. Here we used systems biology approaches to predict and validate a gene regulatory network involving a dynamic interplay between the transcription factors NF-κB, C/EBPδ, and ATF3 that controls inflammatory responses. We mathematically modeled transcriptional regulation of Il6 and Cebpd genes and experimentally validated the prediction that the combination of an initiator (NF-κB), an amplifier (C/EBPδ) and an attenuator (ATF3) forms a regulatory circuit that discriminates between transient and persistent Toll-like receptor 4-induced signals. Our results suggest a mechanism that enables the innate immune system to detect the duration of infection and to respond appropriately. Experiment Overall Design: Bone marrow-derived macrophages stimulated with LPS for 0, 20, 40, 60, 80, 120, 240 and 360 minutes.http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-14769http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-14769/samples/