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systemtissueyoung adult tendon, plantaris (PRJNA534509)young adultPRJNA576272skeletomuscular systemtissueyoung adult tendon, supraspinatus (PRJNA576272)unknown-agePRJNA694168integumentary systemprimary cell cultureunknown-age adipose, adipocyte, stromal vascular cells (PRJNA694168)adultPRJNA217502integumentary systemtissueadult adipose, epididymal (PRJNA217502)unknown-agePRJNA623348integumentary systemcell lineunknown-age fibroblast, embryonic REF cell line (PRJNA623348)embryonicPRJNA313296integumentary systemprimary cell cultureembryonic primary foetal fibroblasts (PRJNA313296)unknown-agePRJNA510786integumentary systemcell lineunknown-age REF cell line (embryonic fibroblast) (PRJNA510786)juvenilePRJNA480035integumentary systemtissuejuvenile skin (PRJNA480035)mature adultPRJNA400079integumentary systemtissuemature adult skin (PRJNA400079)aged adultPRJNA400079integumentary systemtissueaged adult skin (PRJNA400079)adultPRJNA532974integumentary systemtissueadult skin (PRJNA532974)adultPRJNA612304integumentary systemtissueadult skin, back (PRJNA612304)adultPRJNA399105integumentary systemtissueadult skin, hind paw (PRJNA399105)aged adultPRJNA265208integumentary systemtissueaged adult white adipose tissue (PRJNA265208)young adultPRJNA381556immune systembone marrowyoung adult femoral bone marrow (PRJNA381556)unknown-agePRJNA274942immune systemprimary cell cultureunknown-age macrophage (PRJNA274942)adultPRJNA516924immune systemprimary cell cultureadult macrophage, alveolar (PRJNA516924)adultPRJEB22553immune systemprimary cell cultureadult macrophage, bone marrow derived (PRJEB22553)adultPRJEB22553immune systemprimary cell cultureadult macrophage, bone marrow derived + 7h lipopolysaccharide (PRJEB22553)neonatalPRJNA523827immune systemprimary cell cultureneonatal macrophage, microglia (PRJNA523827)adultPRJNA343038immune systemprimary cell cultureadult macrophage, microglia (PRJNA343038)adultPRJNA387565immune systemprimary cell cultureadult macrophages, perivascular (PRJNA387565)neonatalPRJNA238328immune systemtissueneonatal spleen (PRJNA238328)adolescentPRJNA238328immune systemtissueadolescent spleen (PRJNA238328)mature adultPRJNA238328immune systemtissuemature adult spleen (PRJNA238328)aged adultPRJNA238328immune systemtissueaged adult spleen (PRJNA238328)adultPRJNA742266immune systemtissueadult spleen (PRJNA742266)unknown-agePRJNA515759immune systemprimary cell cultureunknown-age T cells CD4+ from brain, meninges (PRJNA515759)unknown-agePRJNA515759immune systemprimary cell cultureunknown-age T-cells CD4+ from brain, parenchyma (PRJNA515759)unknown-agePRJNA515759immune systemprimary cell cultureunknown-age T-cells, CD4+ from blood (PRJNA515759)adolescentPRJNA524128immune systemprimary cell cultureadolescent T-cells, circulating (PRJNA524128)young adultPRJNA524128immune systemprimary cell cultureyoung adult T-cells, circulating (PRJNA524128)adolescentPRJNA524128immune systemprimary cell cultureadolescent T-cells, kidney (PRJNA524128)young adultPRJNA524128immune systemprimary cell cultureyoung adult T-cells, kidney (PRJNA524128)neonatalPRJNA238328immune systemtissueneonatal thymus (PRJNA238328)adolescentPRJEB22693immune systemtissueadolescent thymus (PRJEB22693)adolescentPRJNA238328immune systemtissueadolescent thymus (PRJNA238328)young adultPRJNA238328immune systemtissueyoung adult thymus (PRJNA238328)aged adultPRJNA238328immune systemtissueaged adult thymus (PRJNA238328)adultPRJNA742266immune systemtissueadult thymus (PRJNA742266)adultPRJNA282032immune systemprimary cell cultureadult white blood cells (PRJNA282032)young adultPRJNA209702male reproductive systemprimary cell cultureyoung adult pachytene spermatocytes (PRJNA209702)unknown-agePRJNA480506male reproductive systemtissueunknown-age prostate epithelium (PRJNA480506)unknown-agePRJNA480506male reproductive systemtissueunknown-age prostate stroma (PRJNA480506)young adultPRJNA209702male reproductive systemprimary cell cultureyoung adult round spermatids (PRJNA209702)juvenilePRJNA209702male reproductive systemprimary cell culturejuvenile Sertoli cells (PRJNA209702)neonatalPRJNA209702male reproductive systemprimary cell cultureneonatal spermatogonia (PRJNA209702)embryonicPRJNA528975male reproductive systemtissueembryonic testis (PRJNA528975)neonatalPRJNA238328male reproductive systemtissueneonatal testis (PRJNA238328)adolescentPRJNA238328male reproductive systemtissueadolescent testis (PRJNA238328)young adultPRJNA238328male reproductive systemtissueyoung adult testis (PRJNA238328)young adultPRJNA338429male reproductive systemtissueyoung adult testis (PRJNA338429)aged adultPRJNA238328male reproductive systemtissueaged adult testis (PRJNA238328)unknown-agePRJNA480508male reproductive systemprimary cell cultureunknown-age testis, Sertoli cell (PRJNA480508)unknown-agePRJNA579050female reproductive systemtissueunknown-age endometrium (eutopic) (PRJNA579050)embryonicPRJNA565932female reproductive systemprimary cell cultureembryonic germinal vesicle oocyte (PRJNA565932)embryonicPRJNA547683female reproductive systemprimary cell cultureembryonic oocyte (PRJNA547683)young adultPRJNA325290female reproductive systemtissueyoung adult ovary (PRJNA325290)unknown-agePRJNA623626female reproductive systemtissueunknown-age placenta (PRJNA623626)juvenilePRJNA301403female reproductive systemcell linejuvenile Rcho-1 cell line (choriocarcinoma) (PRJNA301403)neonatalPRJNA399753female reproductive systemtissueneonatal urogenital sinus, urethra (PRJNA399753)neonatalPRJNA399753female reproductive systemtissueneonatal urogenital sinus, ventral mesenchymal pad (PRJNA399753)neonatalPRJNA238328female reproductive systemtissueneonatal uterus (PRJNA238328)adolescentPRJNA238328female reproductive systemtissueadolescent uterus (PRJNA238328)young adultPRJNA238328female reproductive systemtissueyoung adult uterus (PRJNA238328)young adultPRJNA283039female reproductive systemtissueyoung adult uterus (PRJNA283039)aged adultPRJNA238328female reproductive systemtissueaged adult uterus (PRJNA238328)unknown-agePRJNA606259female reproductive systemtissueunknown-age uterus (pregnant) implantation site (PRJNA606259)unknown-agePRJNA547772female reproductive systemtissueunknown-age visceral yolk sac (PRJNA547772)embryonicPRJNA427087primordia/early developmentprimary cell cultureembryonic embryonic stem cell (PRJNA427087)embryonicPRJNA383538primordia/early developmentprimary cell cultureembryonic embryonic stem cell (P14) (PRJNA383538)embryonicPRJNA383538primordia/early developmentprimary cell cultureembryonic embryonic stem cell (P4) (PRJNA383538)unknown-agePRJNA188784primordia/early developmentcell lineunknown-age embryonic stem cell, DAc8 cell line (PRJNA188784)embryonicPRJNA558708primordia/early developmenttissueembryonic epiblast (PRJNA558708)adultPRJNA319800primordia/early developmentprimary cell cultureadult germ cell (PRJNA319800)embryonicPRJNA558708primordia/early developmentprimary cell cultureembryonic primordial germ cell (PRJNA558708)unknown-agePRJNA547772whole bodytissueunknown-age embryo (PRJNA547772)adolescentPRJNA197149mixedtissueadolescent mixture of multiple tissues (PRJNA197149)unknown-agePRJNA267246mixedtissueunknown-age mixture of multiple tissues (PRJNA267246)unknown-agePRJNA68065mixedtissueunknown-age mixture of multiple tissues (PRJNA68065)Oct.08, 2021the-ratlas-a-transcriptional-atlas-for-the-ratTo generate a comprehensive rat transcriptomic atlas, we curated and down-loaded around 7666 rat RNA-seq datasets - representing 368 BioProjects - from public repositories, down-sampled them to a common depth and quantified expression against a reference transcriptome using the mRNA quantitation tool, Kallisto. The expression atlas presented here details the median downsampled TPM per gene, averaged for tissue, age, and BioProject. Full details in Summers, et al., 'Generation and network analysis of an RNA-seq transcriptional atlas for the rat'roslin_institute_sidTrue24Oct.08, 2021To generate a comprehensive rat transcriptomic atlas, we curated and down-loaded around 7666 rat RNA-seq datasets - representing 368...BDS_00054The Roslin Instituteunknown0The ratlas: a transcriptional atlas for the rat100675