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<biogps><data><item key="owner">The Roslin Institute</item><item key="pop_total">0</item><item key="id">10042</item><item key="factors"><item><item key="1"><item key="organ system">nervous system</item><item key="breed">broiler (Ross 708)</item><item key="sample name">pituitary gland (broiler (Ross 708), 21 days post-hatch)</item><item key="age">21 days post-hatch</item></item></item><item><item key="2"><item key="organ system">nervous system</item><item key="breed">broiler (Ross 708)</item><item key="sample name">pituitary gland (broiler (Ross 708), 22 days post-hatch)</item><item key="age">22 days post-hatch</item></item></item><item><item key="3"><item key="organ system">nervous system</item><item key="breed">broiler (Ross 708)</item><item key="sample name">pituitary gland (broiler (Ross 708), 26 days post-hatch)</item><item key="age">26 days post-hatch</item></item></item><item><item key="4"><item key="organ system">nervous system</item><item key="breed">broiler (Ross 708)</item><item key="sample name">pituitary gland (broiler (Ross 708), 32 days post-hatch)</item><item key="age">32 days post-hatch</item></item></item><item><item key="5"><item key="organ system">nervous system</item><item key="breed">broiler (Ross 708)</item><item key="sample name">pituitary gland (broiler (Ross 708), 42 days post-hatch)</item><item key="age">42 days post-hatch</item></item></item><item><item key="6"><item key="organ system">nervous system</item><item key="breed">broiler (Xinghua)</item><item key="sample name">pituitary gland (during laying phase) (broiler (Xinghua), 28 weeks post-hatch)</item><item key="age">28 weeks post-hatch</item></item></item><item><item key="7"><item key="organ system">nervous system</item><item key="breed">layer (Baier Huang)</item><item key="sample name">pituitary gland (during laying phase) (layer (Baier Huang), 28 weeks post-hatch)</item><item key="age">28 weeks post-hatch</item></item></item><item><item key="8"><item key="organ system">nervous system</item><item key="breed">broiler (Xinghua)</item><item key="sample name">pituitary gland (during incubation phase) (broiler (Xinghua), 28 weeks post-hatch)</item><item key="age">28 weeks post-hatch</item></item></item><item><item key="9"><item key="organ system">nervous system</item><item key="breed">layer (Baier Huang)</item><item key="sample name">pituitary gland (during incubation phase) (layer (Baier Huang), 28 weeks post-hatch)</item><item key="age">28 weeks post-hatch</item></item></item><item><item key="10"><item key="organ system">nervous system</item><item key="breed">unknown</item><item key="sample name">pallium (unknown, 5 days embryo)</item><item key="age">5 days embryo</item></item></item><item><item key="11"><item key="organ system">nervous system</item><item key="breed">j-line</item><item key="sample name">cerebellum (j-line, 16/17 weeks post-hatch)</item><item key="age">16/17 weeks post-hatch</item></item></item><item><item key="12"><item key="organ system">nervous system</item><item key="breed">inbred research line (UCD 001)</item><item key="sample name">cerebellum (inbred research line (UCD 001), unknown (adult))</item><item key="age">unknown (adult)</item></item></item><item><item key="13"><item key="organ system">nervous system</item><item key="breed">inbred research line (UCD 001)</item><item key="sample name">cerebrum (inbred research line (UCD 001), unknown (adult))</item><item key="age">unknown (adult)</item></item></item><item><item key="14"><item key="organ system">nervous system</item><item key="breed">inbred research line (UCD 001)</item><item key="sample name">hypothalamus (inbred research line (UCD 001), unknown (adult))</item><item key="age">unknown (adult)</item></item></item><item><item key="15"><item key="organ system">nervous system</item><item key="breed">inbred research line (UCD 001)</item><item key="sample name">parietal nerve (inbred research line (UCD 001), unknown (adult))</item><item key="age">unknown (adult)</item></item></item><item><item key="16"><item key="organ system">nervous system</item><item key="breed">j-line</item><item key="sample name">left optic lobe (j-line, 16/17 weeks post-hatch)</item><item key="age">16/17 weeks post-hatch</item></item></item><item><item key="17"><item key="organ system">nervous system</item><item key="breed">broiler (F1 from Cobb and Hubbard cross)</item><item key="sample name">cornea (broiler (F1 from Cobb and Hubbard cross), 18 days embryo)</item><item key="age">18 days embryo</item></item></item><item><item key="18"><item key="organ system">nervous system</item><item key="breed">broiler (F1 from Cobb and Hubbard cross)</item><item key="sample name">retina (broiler (F1 from Cobb and Hubbard cross), 8 days embryo)</item><item key="age">8 days embryo</item></item></item><item><item key="19"><item key="organ system">nervous system</item><item key="breed">broiler (F1 from Cobb and Hubbard cross)</item><item key="sample name">retina (broiler (F1 from Cobb and Hubbard cross), 16 days embryo)</item><item key="age">16 days embryo</item></item></item><item><item key="20"><item key="organ system">nervous system</item><item key="breed">broiler (F1 from Cobb and Hubbard cross)</item><item key="sample name">retina (broiler (F1 from Cobb and Hubbard cross), 18 days embryo)</item><item key="age">18 days embryo</item></item></item><item><item key="21"><item key="organ system">cardiovascular system</item><item key="breed">inbred research line (UCD 001)</item><item key="sample name">heart (inbred research line (UCD 001), unknown (adult))</item><item key="age">unknown (adult)</item></item></item><item><item key="22"><item key="organ system">cardiovascular system</item><item key="breed">j-line</item><item key="sample name">heart muscle (j-line, 16/17 weeks post-hatch)</item><item key="age">16/17 weeks post-hatch</item></item></item><item><item key="23"><item key="organ system">muscular system</item><item key="breed">broiler (Hubbard Flex)</item><item key="sample name">breast muscle (with low Warner-Bratzler shear force) (broiler (Hubbard Flex), 42 days post-hatch)</item><item key="age">42 days post-hatch</item></item></item><item><item key="24"><item key="organ system">muscular system</item><item key="breed">broiler (Hubbard Flex)</item><item key="sample name">breast muscle (with high Warner-Bratzler shear force) (broiler (Hubbard Flex), 42 days post-hatch)</item><item key="age">42 days post-hatch</item></item></item><item><item key="25"><item key="organ system">muscular system</item><item key="breed">j-line</item><item key="sample name">breast muscle (j-line, 16/17 weeks post-hatch)</item><item key="age">16/17 weeks post-hatch</item></item></item><item><item key="26"><item key="organ system">muscular system</item><item key="breed">inbred research line (UCD 001)</item><item key="sample name">breast muscle (inbred research line (UCD 001), unknown (adult))</item><item key="age">unknown (adult)</item></item></item><item><item key="27"><item key="organ system">muscular system</item><item key="breed">broiler (Xinghua)</item><item key="sample name">skeletal muscle leg (broiler (Xinghua), 11 days embryo)</item><item key="age">11 days embryo</item></item></item><item><item key="28"><item key="organ system">muscular system</item><item key="breed">broiler (Xinghua)</item><item key="sample name">skeletal muscle leg (broiler (Xinghua), 16 days embryo)</item><item key="age">16 days embryo</item></item></item><item><item key="29"><item key="organ system">muscular system</item><item key="breed">broiler (Xinghua)</item><item key="sample name">skeletal muscle leg (broiler (Xinghua), 1 day post-hatch)</item><item key="age">1 day post-hatch</item></item></item><item><item key="30"><item key="organ system">skeletal system</item><item key="breed">layer (White Leghorn)</item><item key="sample name">tibial bone (incl. marrow) (layer (White Leghorn), 70 weeks post-hatch)</item><item key="age">70 weeks post-hatch</item></item></item><item><item key="31"><item key="organ system">respiratory system</item><item key="breed">layer (White Leghorn)</item><item key="sample name">lung (layer (White Leghorn), 21 days post-hatch)</item><item key="age">21 days post-hatch</item></item></item><item><item key="32"><item key="organ system">respiratory system</item><item key="breed">layer (Fayoumi)</item><item key="sample name">lung (layer (Fayoumi), 21 days post-hatch)</item><item key="age">21 days post-hatch</item></item></item><item><item key="33"><item key="organ system">respiratory system</item><item key="breed">j-line</item><item key="sample name">lung (j-line, 16/17 weeks post-hatch)</item><item key="age">16/17 weeks post-hatch</item></item></item><item><item key="34"><item key="organ system">respiratory system</item><item key="breed">inbred research line (UCD 001)</item><item key="sample name">lung (inbred research line (UCD 001), unknown (adult))</item><item key="age">unknown (adult)</item></item></item><item><item key="35"><item key="organ system">gastrointestinal tract</item><item key="breed">j-line</item><item key="sample name">trachea (j-line, 16/17 weeks post-hatch)</item><item key="age">16/17 weeks post-hatch</item></item></item><item><item key="36"><item key="organ system">gastrointestinal tract</item><item key="breed">j-line</item><item key="sample name">proventriculus (j-line, 16/17 weeks post-hatch)</item><item key="age">16/17 weeks post-hatch</item></item></item><item><item key="37"><item key="organ system">gastrointestinal tract</item><item key="breed">inbred research line (UCD 001)</item><item key="sample name">proventriculus (inbred research line (UCD 001), unknown (adult))</item><item key="age">unknown (adult)</item></item></item><item><item key="38"><item key="organ system">gastrointestinal tract</item><item key="breed">j-line</item><item key="sample name">gizzard fat (j-line, 16/17 weeks post-hatch)</item><item key="age">16/17 weeks post-hatch</item></item></item><item><item key="39"><item key="organ system">gastrointestinal tract</item><item key="breed">j-line</item><item key="sample name">duodenum (j-line, 16/17 weeks post-hatch)</item><item key="age">16/17 weeks post-hatch</item></item></item><item><item key="40"><item key="organ system">gastrointestinal tract</item><item key="breed">j-line</item><item key="sample name">ileum (j-line, 16/17 weeks post-hatch)</item><item key="age">16/17 weeks post-hatch</item></item></item><item><item key="41"><item key="organ system">renal system</item><item key="breed">inbred research line (UCD 001)</item><item key="sample name">kidney (inbred research line (UCD 001), unknown (adult))</item><item key="age">unknown (adult)</item></item></item><item><item key="42"><item key="organ system">renal system</item><item key="breed">inbred research line (UCD 001)</item><item key="sample name">adrenal gland (inbred research line (UCD 001), unknown (adult))</item><item key="age">unknown (adult)</item></item></item><item><item key="43"><item key="organ system">endocrine system</item><item key="breed">j-line</item><item key="sample name">thyroid (j-line, 16/17 weeks post-hatch)</item><item key="age">16/17 weeks post-hatch</item></item></item><item><item key="44"><item key="organ system">endocrine system</item><item key="breed">unknown</item><item key="sample name">liver (unknown, 9 weeks post-hatch)</item><item key="age">9 weeks post-hatch</item></item></item><item><item key="45"><item key="organ system">endocrine system</item><item key="breed">broiler</item><item key="sample name">liver (broiler, 16 weeks post-hatch)</item><item key="age">16 weeks post-hatch</item></item></item><item><item key="46"><item key="organ system">endocrine system</item><item key="breed">j-line</item><item key="sample name">liver (j-line, 16/17 weeks post-hatch)</item><item key="age">16/17 weeks post-hatch</item></item></item><item><item key="47"><item key="organ system">endocrine system</item><item key="breed">inbred research line (UCD 001)</item><item key="sample name">liver (inbred research line (UCD 001), unknown (adult))</item><item key="age">unknown (adult)</item></item></item><item><item key="48"><item key="organ system">endocrine system</item><item key="breed">j-line</item><item key="sample name">pancreas (j-line, 16/17 weeks post-hatch)</item><item key="age">16/17 weeks post-hatch</item></item></item><item><item key="49"><item key="organ system">immune system</item><item key="breed">unknown</item><item key="sample name">bone marrow derived dendritic cell (unknown, 42 days post-hatch)</item><item key="age">42 days post-hatch</item></item></item><item><item key="50"><item key="organ system">immune system</item><item key="breed">unknown</item><item key="sample name">bone marrow derived macrophage (unknown, 42 days post-hatch)</item><item key="age">42 days post-hatch</item></item></item><item><item key="51"><item key="organ system">immune system</item><item key="breed">unknown</item><item key="sample name">bone marrow derived macrophage + CSF1 (unknown, 7 days embryo)</item><item key="age">7 days embryo</item></item></item><item><item key="52"><item key="organ system">immune system</item><item key="breed">broiler</item><item key="sample name">BMDM LPS time course 0 hrs (broiler (Ross 308), 8 weeks post-hatch)</item><item key="age">8 weeks post-hatch</item></item></item><item><item key="53"><item key="organ system">immune system</item><item key="breed">layer</item><item key="sample name">BMDM LPS time course 0 hrs (layer (NOVOgen Brown), 8 weeks post-hatch)</item><item key="age">8 weeks post-hatch</item></item></item><item><item key="54"><item key="organ system">immune system</item><item key="breed">broiler</item><item key="sample name">BMDM LPS time course 24 hrs (broiler (Ross 308), 8 weeks post-hatch)</item><item key="age">8 weeks post-hatch</item></item></item><item><item key="55"><item key="organ system">immune system</item><item key="breed">layer</item><item key="sample name">BMDM LPS time course 24 hrs (layer (NOVOgen Brown), 8 weeks post-hatch)</item><item key="age">8 weeks post-hatch</item></item></item><item><item key="56"><item key="organ system">immune system</item><item key="breed">immortalised cell line</item><item key="sample name">HD11 macrophages (unknown, immortalised cell line)</item><item key="age">immortalised cell line</item></item></item><item><item key="57"><item key="organ system">immune system</item><item key="breed">unknown</item><item key="sample name">heterophil (unknown, 1 day post-hatch)</item><item key="age">1 day post-hatch</item></item></item><item><item key="58"><item key="organ system">immune system</item><item key="breed">j-line</item><item key="sample name">bursa (j-line, 16/17 weeks post-hatch)</item><item key="age">16/17 weeks post-hatch</item></item></item><item><item key="59"><item key="organ system">immune system</item><item key="breed">broiler</item><item key="sample name">caecal tonsil (chicken caecum has low Campylobacter load) (broiler, 35 days post-hatch)</item><item key="age">35 days post-hatch</item></item></item><item><item key="60"><item key="organ system">immune system</item><item key="breed">broiler</item><item key="sample name">caecal tonsil (chicken caecum has high Campylobacter load) (broiler, 35 days post-hatch)</item><item key="age">35 days post-hatch</item></item></item><item><item key="61"><item key="organ system">immune system</item><item key="breed">j-line</item><item key="sample name">caecal tonsil (j-line, 16/17 weeks post-hatch)</item><item key="age">16/17 weeks post-hatch</item></item></item><item><item key="62"><item key="organ system">immune system</item><item key="breed">broiler</item><item key="sample name">spleen (broiler, 22 days post-hatch)</item><item key="age">22 days post-hatch</item></item></item><item><item key="63"><item key="organ system">immune system</item><item key="breed">layer (Fayoumi)</item><item key="sample name">spleen (layer (Fayoumi), 22 days post-hatch)</item><item key="age">22 days post-hatch</item></item></item><item><item key="64"><item key="organ system">immune system</item><item key="breed">inbred research line (UCD 001)</item><item key="sample name">spleen (inbred research line (UCD 001), unknown (adult))</item><item key="age">unknown (adult)</item></item></item><item><item key="65"><item key="organ system">immune system</item><item key="breed">j-line</item><item key="sample name">thymus (j-line, 16/17 weeks post-hatch)</item><item key="age">16/17 weeks post-hatch</item></item></item><item><item key="66"><item key="organ system">integumentary system</item><item key="breed">unknown</item><item key="sample name">fibroblast (DF1 cell line) (unknown, 7 days embryo)</item><item key="age">7 days embryo</item></item></item><item><item key="67"><item key="organ system">integumentary system</item><item key="breed">unknown</item><item key="sample name">beak epithelium (unknown, 14 days embryo)</item><item key="age">14 days embryo</item></item></item><item><item key="68"><item key="organ system">integumentary system</item><item key="breed">unknown</item><item key="sample name">claw epithelium (unknown, 14 days embryo)</item><item key="age">14 days embryo</item></item></item><item><item key="69"><item key="organ system">integumentary system</item><item key="breed">unknown</item><item key="sample name">feather epithelium (unknown, 14 days embryo)</item><item key="age">14 days embryo</item></item></item><item><item key="70"><item key="organ system">integumentary system</item><item key="breed">unknown</item><item key="sample name">reticulate scale epithelium (unknown, 14 days embryo)</item><item key="age">14 days embryo</item></item></item><item><item key="71"><item key="organ system">integumentary system</item><item key="breed">unknown</item><item key="sample name">reticulate scale epithelium (unknown, 16 days embryo)</item><item key="age">16 days embryo</item></item></item><item><item key="72"><item key="organ system">integumentary system</item><item key="breed">unknown</item><item key="sample name">scutate scale epithelium (unknown, 14 days embryo)</item><item key="age">14 days embryo</item></item></item><item><item key="73"><item key="organ system">integumentary system</item><item key="breed">unknown</item><item key="sample name">scutate scale epithelium (unknown, 16 days embryo)</item><item key="age">16 days embryo</item></item></item><item><item key="74"><item key="organ system">integumentary system</item><item key="breed">inbred research line (UCD 001)</item><item key="sample name">adipose (inbred research line (UCD 001), unknown (adult))</item><item key="age">unknown (adult)</item></item></item><item><item key="75"><item key="organ system">integumentary system</item><item key="breed">broiler</item><item key="sample name">white adipose (chicken selected for abominal fatness) (broiler, 7 weeks post-hatch)</item><item key="age">7 weeks post-hatch</item></item></item><item><item key="76"><item key="organ system">integumentary system</item><item key="breed">broiler</item><item key="sample name">white adipose (chicken selected for abominal leanness) (broiler, 7 weeks post-hatch)</item><item key="age">7 weeks post-hatch</item></item></item><item><item key="77"><item key="organ system">integumentary system</item><item key="breed">unknown</item><item key="sample name">white adipose (unknown, 9 weeks post-hatch)</item><item key="age">9 weeks post-hatch</item></item></item><item><item key="78"><item key="organ system">integumentary system</item><item key="breed">broiler</item><item key="sample name">white adipose (broiler, 16 weeks post-hatch)</item><item key="age">16 weeks post-hatch</item></item></item><item><item key="79"><item key="organ system">integumentary system</item><item key="breed">j-line</item><item key="sample name">skin (j-line, 16/17 weeks post-hatch)</item><item key="age">16/17 weeks post-hatch</item></item></item><item><item key="80"><item key="organ system">female reproductive system</item><item key="breed">j-line</item><item key="sample name">ovary (j-line, 16/17 weeks post-hatch)</item><item key="age">16/17 weeks post-hatch</item></item></item><item><item key="81"><item key="organ system">female reproductive system</item><item key="breed">inbred research line (UCD 001)</item><item key="sample name">ovary (inbred research line (UCD 001), unknown (adult))</item><item key="age">unknown (adult)</item></item></item><item><item key="82"><item key="organ system">male reproductive system</item><item key="breed">inbred research line (UCD 001)</item><item key="sample name">testis (inbred research line (UCD 001), unknown (adult))</item><item key="age">unknown (adult)</item></item></item><item><item key="83"><item key="organ system">embryo</item><item key="breed">unknown</item><item key="sample name">embryonic cell (unknown, 7 days embryo)</item><item key="age">7 days embryo</item></item></item><item><item key="84"><item key="organ system">embryo</item><item key="breed">unknown</item><item key="sample name">embryonic fibroblast (unknown, unknown (embryo))</item><item key="age">unknown (embryo)</item></item></item><item><item key="85"><item key="organ system">embryo</item><item key="breed">unknown</item><item key="sample name">whole embryo (unknown, embryo HH4)</item><item key="age">embryo HH4</item></item></item><item><item key="86"><item key="organ system">embryo</item><item key="breed">unknown</item><item key="sample name">whole embryo (unknown, embryo HH4/5)</item><item key="age">embryo HH4/5</item></item></item><item><item key="87"><item key="organ system">embryo</item><item key="breed">unknown</item><item key="sample name">whole embryo (unknown, embryo HH11)</item><item key="age">embryo H11</item></item></item><item><item key="88"><item key="organ system">embryo</item><item key="breed">unknown</item><item key="sample name">whole embryo (unknown, embryo HH14)</item><item key="age">embryo HH14</item></item></item><item><item key="89"><item key="organ system">embryo</item><item key="breed">unknown</item><item key="sample name">whole embryo (unknown, embryo HH25/26)</item><item key="age">embryo HH25/26</item></item></item><item><item key="90"><item key="organ system">embryo</item><item key="breed">unknown</item><item key="sample name">whole embryo (unknown, embryo HH32)</item><item key="age">embryo HH32</item></item></item><item><item key="91"><item key="organ system">embryo</item><item key="breed">unknown</item><item key="sample name">whole embryo (unknown, embryo HH36)</item><item key="age">embryo HH36</item></item></item></item><item key="ownerprofile_id">roslin_institute_sid</item><item key="platform">22</item><item key="summary_wrapped">This dataset displays a survey of gene expression across a wide range of tissues and primary cells, taken from various RNA-seq analyses...</item><item key="pubmed_id">30086717</item><item key="owner_profile">/profile/10549/roslin_institute</item><item key="factor_count">4</item><item key="sample_count">91</item><item key="tags"/><item key="sample_geneid">422076</item><item key="lastmodified">Nov.27, 2019</item><item key="is_default">False</item><item key="geo_gds_id">unknown</item><item key="slug">chicken-atlas</item><item key="geo_id_plat">unknown</item><item key="name">Chicken Atlas</item><item key="created">Nov.01, 2017</item><item key="summary">This dataset displays a survey of gene expression across a wide range of tissues and primary cells, taken from various RNA-seq analyses of the domestic chicken (Gallus gallus)</item><item key="geo_gse_id">BDS_00031</item><item key="species">9031</item></data></biogps>
