BioGPS Dataset API

• BioGPS dataset web services

  • List Methods
  • Expand Methods

  • GETBioGPS Dataset/dataset/:dataset_id/
    Get the metadata of a registered BioGPS dataset by its GEO (http://www.ncbi.nlm.nih.gov/geo/) or dataset ID
    
    

    Parameter	Value	Type	Location	Description
    dataset_id		string	query	Dataset ID (GSE1133, 1, etc)
    format	jsonxml	enumerated	query	json or xml

  • GETBioGPS Dataset Values/dataset/:dataset_id/values/
    Get the data in a registered BioGPS dataset for the provided reporter IDs
    
    

    Parameter	Value	Type	Location	Description
    dataset_id		string	query	Dataset ID (GSE1133, 1, etc)
    reporters		string	query	Comma-separated reporter names (1007_s_at,1053_at)
    format	csvjsonxml	enumerated	query	csv, json, or xml

  • GETBioGPS Dataset Static Chart/dataset/:dataset_id/chart/:reporter_id/
    Get the static expression chart for a reporter in a registered BioGPS dataset
    
    

    Parameter	Value	Type	Location	Description
    dataset_id		string	query	Dataset ID (GSE1133, 1, etc)
    reporter_id		string	query	Reporter ID (1007_s_at)

  • GETBioGPS Dataset Correlation/dataset/:dataset_id/corr/:reporter_id/
    Get the correlation of a sample to all other samples in a registered BioGPS dataset
    
    

    Parameter	Value	Type	Location	Description
    dataset_id		string	query	Dataset ID (GSE1133, 1, etc)
    reporter_id		string	query	Reporter ID (1007_s_at)
    co		string	query	Correlation threshold (0.5 - 1)
    format	jsonxml	enumerated	query	json or xml